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32 protocols using jms t100 gcv

1

Purification and Characterization of Organic Compounds

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All commercial reagents were used as received. Column chromatography was carried out on 60 N silica gel (Kanto Chemicals). Optical rotations were recorded on JASCO P-2200 digital polarimeter. 1H- and 13C-NMR spectra were recorded on Bruker DRX-500 or Bruker AMX-500 spectrometer (500 MHz for 1H-NMR and 125 MHz for 13C-NMR). NMR spectra were recorded in C6D6 (99.5 atom% enriched, Kanto). 1H chemical shifts were reported in δ value based on residual benzene (7.15 ppm) as a reference. 13C chemical shifts were reported in δ value based on benzene (128.0 ppm) as a reference. Data are reported as follows: chemical shift, multiplicity (s = singlet, d = doublet, t = triplet, q = quartet, m = multiplet, br = broad), coupling constant (Hz), and integration. GC-MS analyses were conducted with MS-2010 (Shimadzu). Mass spectra were obtained with a JEOL JMS-T100GCV (EI mode).
Oligonucleotides for polymerase chain reactions (PCRs) were purchased from Hokkaido System Science Co., Ltd. PCRs were performed with a BioRad S1000 thermal cycler.
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2

GC-MS Analysis of C. militaris Compounds

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A volume of 1 µL aliquot of each C. militaris fraction was injected into a GC-MS system (JMS-T100 GCV, JEOL Ltd., Tokyo, Japan). The column employed in this experiment was DB-5MS column (length 30 m, internal diameter 0.25 mm, thickness 0.25 µm) (Agilent Technologies, J & W Scientific Products, Folsom, CA, USA). The system uses helium as a carrier gas and the split ratio was 5.0/1.0. The temperature program was set up in the GC oven as follows: the initial temperature at 50 °C without hold time, the programmed rate by 10 °C/min up to a final temperature of 300 °C with 20 min for hold time. The injector and detector temperatures were set at 300 °C and 320 °C, respectively. The mass range scanned from 29–800 amu. The peak data set was collected by using the JEOL’s GC-MS Mass Center System version 2.65a (JEOL Ltd., Tokyo, Japan) and by comparing detected peaks with National Institute of Standards and Technology (NIST) MS library [44 (link)].
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3

GC/MS Analysis of Essential Oil Components

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The components of EOs were analyzed using gas chromatography/mass spectrometry (GC/MS). The instrument (JMS-T100GCV; JEOL Ltd., Tokyo, Japan) was equipped with an Agilent DB-5MS capillary column (30 m × 0.25 mm i.d., 0.25-μm film thickness, Agilent Technologies, Santa Clara, CA, USA). The oven was programmed as follows: initial temperature of 40 °C (held for 5 min) and heated at a rate of 10 °C /min to 320 °C (held for 3 min). The injector temperature was maintained at 250 °C. Helium was used as the carrier gas at a flow rate of 1.0 mL/min. The ionization voltage was 70 eV, and the mass range was 35–650 m/z. Analysis was performed using two methods. First, the mass spectrum of each EO component was determined by comparison with the mass spectrum from the NIST 11 spectrum library. The percentage composition of each component was calculated based on the respective peak areas. Second, some major components of the EO were quantitatively analyzed. The amount of each component was obtained from a calibration curve prepared using the corresponding standard product.
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4

Structural Characterization of Organic Compounds

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Optical rotations were obtained with a JASCO P-2200 polarimeter. NMR spectra were recorded in C6D6, CD3OD and CDCl3 using a JNM-EX 270 FT-NMR spectrometer (JEOL, 1H NMR: 270 MHz) and AMX 500 Bruker system (1H NMR: 500 MHz, 13C NMR: 126 MHz). Assignment of H and C was performed by obtaining 1H NMR, 13C NMR (referenced for C6D6, CD3OD and CDCl3 at δH 7.16, 3.31 and 7.24, and δC 128.4, 49.2 and 77.2, respectively), COSY, HSQC, HMBC, and NOESY spectra. FD-MS analysis was performed on a JMS-T100GCV (JEOL) instrument. Chromatographic analysis was performed using an HPLC system (InertSustain, A210max nm) equipped with a Shisheido Capcell park C18 column (4.6 × 250 nm, 5 µm, 2 mL/min, MeOH-H2O, 80:20) and a Cadenza CK-C18 column (6 × 250 nm, 3 µm, 2 mL/min, MeOH-H2O, 80:20). All moisture-sensitive reactions were performed under a nitrogen gas atmosphere. All chemicals used in the study were of analytical grade and purchased from Sigma–Aldrich, Tokyo, Japan, Kanto Chemical Co., Inc, Tokyo, Japan, and Cayman Chemical, Ann Arbor, MI, USA.
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5

Monosaccharide Profiling by GCMS

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Partially methylated alditol acetates (PMAAs) of the monosaccharide components from oligosaccharides were prepared according to the method of Anumula and Taylor [24 (link)]. Gas chromatography–mass spectrometry (GC–MS) analysis was performed by an Agilent Technologies 7890A GC system (Agilent Technologies, CA, USA) and Time-of-flight mass spectrometer JMS-T100GCV (JEOL, Tokyo, Japan). Mass spectra were obtained by electro impact ionization (70 eV) with the following program parameters: column, ZB-5 ms column (0.25 µm film thickness, 0.25 µm i.d. × 30 m) (Phenomenex, CA, USA); carrier gas, helium at 1.2 ml/min; column oven temperature program: 3 min at 100°C, with an increase at 4°C/min to 160°C, 1 min at 160°C followed by an increase at 0.5°C/min to 180°C, and a final increase at 20°C/min to 260°C and held for 10 min at 260°C.
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6

Photophysical Properties of Eu(III) and Gd(III) Complexes

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1H-NMR spectra were recorded in CDCl3 on a JEOL ECS-400 (400 MHz) spectrometer; tetramethylsilane was used as the internal reference. Electron ionization (EI) and electrospray ionization (ESI) mass spectrometry were performed using JEOL JMS-T100 GCv and JEOL JMS-T100 LP instruments, respectively. Elemental analyses were performed using MICRO CORDER JM10. UV-vis absorption spectra for ligand 1 and Eu(III) complex 2 were measured using a JASCO V-670 spectrophotometer. Emission spectrum, excitation spectrum, and emission lifetime for Eu(III) complex 2 were measured using a Horiba FluoroLog®3 spectrofluorometer. Emission spectrum and lifetime for Gd(III) complex 5 were measured using a FP-6300 spectrofluorometer with a nitrogen bath cryostat (Oxford Instruments, Optistat DN) and a temperature controller (Oxford Instruments ITC-502S). Emission spectrum for the ligand 1 was measured using a FP-6300 spectrofluorometer with a nitrogen bath cryostat (Oxford Instruments, Optistat DN) and a temperature controller (Oxford Instruments ITC-502S). Emission quantum yield for Eu(III) complex 2 was measured using a FP-6300 spectrofluorometer with an integration sphere (ILF-533).
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7

Analytical Techniques for Compound Characterization

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NMR spectra were recorded in CDCl3 using a JNM-EX 270 FT-NMR spectrometer (JEOL) for 1H NMR experiments at 270 MHz and an AMX 500 (Bruker) for 1H NMR experiments at 500 MHz. FD-MS and FI-MS analyses were performed on a JMS-T100GCV (JEOL) instrument. GC-MS analyses were performed using a Varian instrument. Authentic CJ was purchased from Sigma-Aldrich. LA-d5 (98%) was purchased from Cambridge Isotope Laboratories, Inc.
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8

GC-TOFMS Analysis of CSF Lipids

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For the GC‐TOFMS analysis, we followed the method described in our previous publication (Kageyama et al., 2018). In brief, 100 µl of CSF samples was added to 25 µl of 1N HCL, 400 µl of methanol, and 1,000 µl of isooctane. Then, 2.5 ng of oleic acid‐d9 (Avanti Polar Lipids, AL, USA) was added to each CSF sample as an internal standard. The solution was thoroughly mixed and centrifuged at 800 × g for 2 min at room temperature. The supernatant was evaporated and then dissolved in 40 µl of pyridine, 40 µl of N‐(tert‐Butyldimethylsilyl)‐N‐methyltrifluoroacetamide, and 30 µl of acetonitrile for the GC‐TOFMS analysis by using JMS‐T100GCV (JEOL). The absolute concentration was quantified using a standard reference of nervonic acid (Sigma‐Aldrich).
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9

Multimodal Characterization of Bioactive Compounds

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The X-ray intensity data were measured on a Bruker D8 goniometer system equipped with a Bruker Turbo X-ray Source rotating-anode X-ray tube (MoKa, λ = 0.71073 Å) and a multilayered confocal mirror monochromator. 1H- and 13C-NMR spectra were acquired on a Bruker Ascend 400 MHz NMR spectrometer (BRUKER BioSpin, Faellanden, Switzerland) at 400 and 125 MHz, respectively. LTQ Orbitrap XL mass spectrometer (Thermo Fisher Scientific, Waltham, MA, USA) equipped with a source of electrospray ionization (ESI) was employed to get ESI-MS spectra of pure compounds. A Jasco HPLC system consisting of PU-4180 RHPLC pump, LC-Net II/ADC controller, and UV-4075 UV/Vis detector (Jasco, Tokyo, Japan) and the GC–MS system (JMS-T100 GCV, JEOL Ltd., Tokyo, Japan) were used to identify bioactive constituents. Biological activities were in vitro assayed by using a MultiskanTM microplate spectrophotometer (Thermo Fisher Scientific, Osaka, Japan) and U-shape microplates (Greiner Bio-one, Monroe, NC, USA). Reagents, solvents, and chemicals at high grades were purchased from Fujifilm Wako Pure Chemical Corporation (Osaka, Japan), Junsei Chemical Co., Ltd. (Tokyo, Japan), Fisher Scientific company (Hampton, NH, USA) and Sigma-Aldrich (St. Louis, MO, USA).
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10

GC-MS Analysis of Organic Compounds

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A volume of 1 µL of sample was injected into a GC-MS system (JMS-T100 GCV, JEOL Ltd., Tokyo, Japan). The column was DB-5MS with 30 m in length, 0.25 mm internal diameter, and 0.25 µm in thickness (Agilent Technologies, J&W Scientific Products, Folsom, CA, USA). Helium was chosen as the carrier gas, and the split ratio was 5.0/1.0. The operating condition of GC oven temperature was maintained as follows: The initial temperature = 50 °C without hold time, the programmed rate = 10 °C/min up to a final temperature of 300 °C with 20 min for hold time. The injector and detector temperatures were set at 300 °C and 320 °C, respectively. The mass range scanned from 29–800 amu. The control of the GC-MS system and the data peak processing were carried out using the JEOL’s GC-MS Mass Center System version 2.65a software (JEOL Ltd., Tokyo, Japan).
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