The largest database of trusted experimental protocols

9 protocols using ab48012

1

PGRMC1 Quantification in Human Serum

Check if the same lab product or an alternative is used in the 5 most similar protocols
The PGRMC1 concentration in human serum was measured by the ELISA (CUSABIO, CSB-EL017876HU). Serum samples were added into a 96-well plate with pre-coated anti-PGRMC1 antibody (ab48012, Abcam) to incubate for 1h at 37°C, then the plate was washed with PBST buffer (3.2 mM Na2HPO4, 0.5 mM KH2PO4, 1.3 mM KCl, 135 mM NaCl, 0.05% Tween 20, pH 7.4) for 5 times, and incubated with the secondary antibodies for 1h at 37°C. Being stopped by adding 1 N HCl, the absorbance in the 96-well plate was detected at 450 nm on an ELISA Reader (Multiskan Mk3, thermo) with the correction factor at 570 nm.
+ Open protocol
+ Expand
2

Quantitative Immunohistochemical Analysis of PGRMC1

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue samples were paraffin-embedded to cut into sections with 4μm thickness for hematoxylin-eosin (HE) and immunohistochemistry (IHC) analysis mainly according to our previous protocols [21 (link)]. The primary anti-PGRMC1 antibody (ab48012, Abcam) was used at a dilution of 1:200. The second antibody was a biotinylated anti-goat IgG (ZB-2306, ZSGB-BIO Corp., Beijing, China). Tissue slices were visualized by 3, 3-diaminobenzidine solution and counterstained with hematoxylin. Meanwhile the primary antibody was substituted by phosphate-buffered saline (PBS) serving as a control sample.
An estimated percentage of IHC staining was determined by calculating the average number of positive stained cells from 3–4 microscopic fields under 400-fold magnification. The score for positive staining cells was defined as 0–4 with the percent of positive cells separately ranged from 0–5%, 6–25%, 26–50%, 51–75% and over 75%. Similarly the staining intensity was divided into 4 levels: 0, negative; 1, weak; 2, moderate; 3, strong. The final immunoreactivity score for each tissue slice was defined as the staining intensity multiplied by percentage of positive cells [22 (link)]. The scores, ranging from 0 to 12, indicate different PGRMC1 abundance in tissues, including a negative (0, -); weak (1–3, +), moderate (4–7, ++) and strong PGRMC1 abundance (8–12, +++).
+ Open protocol
+ Expand
3

In-situ Proximity Ligation Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
The in-situ proximity ligation assay (PLA) procedure was performed with the Duolink® PLA Kit (Sigma-Aldrich, DUO92008) and following the manufacturers protocol. The cells were incubated with the primary antibodies i.e., anti-PGRMC1 (Abcam, ab48012) with PHB1 (Abcam, ab75766) and PHB2 (Cell signaling, 14085S) overnight at 4 °C. The slides were washed twice for 5 min with buffer A, followed by incubation with the PLA probes (anti-goat PLUS and anti-rabbit MINUS) in antibody diluent for 60 min at 37 °C. After washing twice for 5 min with buffer A, ligation was performed using ligase diluted in ligation buffer for 30 min at 37 °C. Then the cells were washed with buffer A before incubation for 100 min with amplification stock solution at 37 °C. After washing twice for 10 min with buffer B, nuclear DNA was labeled with DAPI for 10 min and slides were mounted with mounting medium. Negative PLA control was performed using respective isotype control antibodies (isotype goat, Abcam, ab37373; isotype rabbit, Abcam, ab37415). Red fluorescence dots inside the cellular areas representing a single protein–protein interaction were quantified using image J software.
+ Open protocol
+ Expand
4

Western Blot Quantification of PGRMC1

Check if the same lab product or an alternative is used in the 5 most similar protocols
To validate the accuracy of MS quantification for PGRMC1, PGRMC1 concentration in tissue or serum sample was also detected by Western blotting. 40ug tissue proteins, or 20μg serum samples without high-abundant proteins were separated on a 12% SDS-PAGE gel, then transferred onto a PVDF membrane. Subsequently the membrane was incubated in TBST buffer (20mM Tris-HCl, pH 7.6, 150mM NaCl, 0.1% Tween-20) with 5% non-fat milk to block nonspecific binding at room temperature for 1 h. Then the PVDF membrane was incubated with the anti-PGRMC1 antibody (ab48012, Abcam) at a dilution of 1:1000 in TBST with 1% non-fat dry milk overnight at 4°C. The PVDF membrane was washed with the blocking solution and incubated with the HRP-conjugated secondary antibody with a dilution of 1:10000 (ZhongShan-Golden Bridge, China) at 37°C for 1h. Detection was carried out using the ECL reagent (Amersham Biosciences, Piscataway, New Jersey, USA). For the cellular protein sample, β-actin was taken as a comparison control for western blotting.
+ Open protocol
+ Expand
5

Proximity Ligation Assay for Protein Interactions

Check if the same lab product or an alternative is used in the 5 most similar protocols
The proximity ligation assay (PLA) procedure was performed using the Duolink® PLA Kit (Sigma-Aldrich, DUO92008) according to the manufacturer’s instructions. Cells were spun on glass slides, fixed and permeabilized as described above. Incubation with the primary antibody cocktail containing anti-PGRMC1 antibody (Abcam, ab48012) or anti-ERα antibody (Abcam, ab259427) with PHB1 (Abcam, ab75766) or PHB2 (Cell signaling, 14085S) antibody was performed overnight at 4 °C. Negative control PLA was performed using respective isotype control antibodies (goat isotype, Abcam ab37373; mouse isotype, Abcam ab37355; rabbit isotype, Abcam ab37415). Nuclear DNA was labeled with DAPI for 10 min and slides examined by fluorescence microscopy within one week after storage at 4 °C in the dark. Each red dot represented a single interaction. Dots per cell were quantified using imageJ software [38 (link)].
+ Open protocol
+ Expand
6

Characterizing PGRMC1 Protein Interactions

Check if the same lab product or an alternative is used in the 5 most similar protocols
The expression vector, FLAG-PGRMC1 WT or Y113F, was transfected into 3T3L1 cells by using Lipofectamine 2000 (Life Technologies, Carlsbad, CA). After 48 h, the cells were lysed in NP40 lysis buffer [20 mmol l−1 Tris-HCl (pH 7.5), 150 mmol l−1 NaCl, 1% NP40], and the lysate was incubated with 10 µl of equilibrated anti-FLAG (M2) agarose for 60 min at room temperature. The bounds proteins were subjected to SDS-PAGE and visualized by western blotting.
For co-immunoprecipitation with endogenous PGRMC1, 3T3L1 cell lysate was incubated with 1 µg anti-PGRMC1 antibody (Abcam: ab48012) or normal rabbit IgG (Abcam: ab37415) for 2 h, and then incubated with 10 µl protein A-sepharose beads (Invitrogen, 101142) for overnight. Precipitates were washed three times in NP40 lysis buffer, and bound proteins were subjected to SDS-PAGE and visualized by western blotting using antibodies against PGRMC1 (Genetex: GTX89362), LDL-R (R&D: AF2255), or GLUT4 (Abcam: ab33780).
+ Open protocol
+ Expand
7

Immunofluorescence Staining of Cellular Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were spun on glass slides, fixed with 4% PFA (Sigma-Aldrich, 20649296018) for 10 min at room temperature and washed three times for 5 min with washing buffer (Dako, Glostrup, Denmark, S3006). Afterwards, cells were permeabilized with 0.1% Triton X-100 (Sigma-Aldrich, T8787) in PBS for 10 min at room temperature (RT) and washed three times for 5 min with washing buffer. DAKO Protein Blocking Solution (Dako, X0909) was added and incubated for 1 h at RT. Cells were subjected to immunofluorescence staining with primary antibodies specific for PGRMC1 (Abcam ab48012), ERα (Abcam ab259427), PHB1 (Abcam ab75766) and PHB2 (Cell signaling 14085S) overnight at 4 °C. Afterwards, the slides were washed three times for 5 min with washing buffer and a respective fluorophore labeled secondary antibody (anti-goat: Invitrogen, A11055; anti-mouse: Invitrogen, 745480; anti-rabbit: Invitrogen, A31573) was added to the samples and incubated for 1 h at RT in the dark. The slides were washed three times for 5 min with washing buffer and incubated with DAPI (Thermo Fisher Scientific, 15733122) for 5 min at RT. Antibody incubation steps were performed in a humidified chamber. The slides were washed with distilled water, mounted with Fluorescent Mounting Medium (Dako, S3023) and dried overnight. The cells were examined by fluorescence microscopy using the Axioplan 2 Imaging fluorescence microscope.
+ Open protocol
+ Expand
8

Quantification of Aβ42 and ApoE Uptake

Check if the same lab product or an alternative is used in the 5 most similar protocols
To quantify Aβ42 and apoE uptake, cells were treated, washed with PBS 3 times, then lysed in RIPA buffer (sc-24948 Sigma-Aldrich, St. Louis, MO, USA) supplemented with protease inhibitor cocktail, and phosphatase inhibitor cocktail 2 and 3 (sc-24948 Sigma-Aldrich, St. Louis, MO, USA). Total Aβ42 was measured via ELISA (Thermo Fisher, KHB3544), total apoE was quantified via ELISA (Abcam ab108813).
Uptake was normalized to total mg of protein per sample measured via Bio-Rad DC protein assay kit (5000112 Bio-Rad Laboratories, Hercules, CA, USA).
Cells were plated in 8-well chamber slides (Lab-Tek cc2 plates, 154534PK Thermo Scientific). Cells were washed 3 times with PBS then fixed with 4% paraformaldehyde (Santa Cruz) for 10 minutes at room temperature, washed 3 times with PBS, then permeabilized with 0.1% Triton X-100 in PBS for 10 minutes at room temperature. Cells were blocked with 10% Goat Serum (50062Z Thermo Scientific) for one hour then incubated with goat anti-PGRMC1 (Abcam ab48012 Images were acquired at 40X magnification on a Leica STED 8X Super-resolution Confocal Microscope.
+ Open protocol
+ Expand
9

Coimmunoprecipitation and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Coimmunoprecipitated proteins were separated by 12% SDS-PAGE. Western blot analysis was performed to determine the coimmunoprecipitation of PGRMC1 with MAOB or BAP31. After protein transfer with a Trans-Blot Turbo Transfer System (Bio-Rad Laboratories), the membranes were first incubated overnight with primary MAOB (1:500, h00004129-b01p; Abnova) or BAP31 (0.4 mg/mL, nbp1-89357; Novus Biologicals) antibodies, washed and then incubated for 1 hour at room temperature with horseradish peroxidase (HRP) conjugated rabbit anti-mouse (1:2,000) or HRP conjugated mouse anti-rabbit (1:2,000) secondary antibodies, respectively (sc-358914 or sc-2357; Santa Cruz Biotechnology). Membranes were then stripped and incubated with primary PGRMC1 antibody (0.1 mg/mL, ab48012; Abcam), washed, and then incubated for 1 hour at room temperature with HRP conjugated mouse antigoat (1:2,000) secondary antibody (sc-2354, Santa Cruz Biotechnology). AntigenÀantibody complexes were detected with an enhanced chemiluminescence detection system (Thermo Fisher), and specific protein bands were visualized by chemiluminescence imaging using a LAS-3000 imaging system (Fujifilm).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!