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13 protocols using dmi400

1

Histological Examination of Frontal Cortex and Hippocampus

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The frontal cortex and hippocampus were dehydrated, embedded in paraffin, sliced into sections of 4 µm, and finally stained with hematoxylin and eosin (HE) using an HE staining kit (Beijing Solarbio Science & Technology Co., Ltd., Guangzhou, China). We used an optical microscope (Leica dMI400, Leica Microsystems Shanghai trading Co., Ltd., Shanghai, China) for imaging. The procedure was repeated six times.
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2

PSD-95 Expression in Frontal Cortex

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We incubated the paraffin sections of the frontal cortex with anti-PSD-95, a primary antibody (1:500; catalog no. 20665-1-AP; Proteintech; Stockport, UK) and a biotinylated secondary antibody at 37 ℃ for 20 minutes. Staining was examined using an optical microscope at 400× magnification. We observed 5 fields in each section for measurement of PSD-95 expression. We used an optical microscope (Leica dMI400, Leica Microsystems Shanghai trading Co., Ltd., China) for imaging. The procedure was repeated three times.
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3

TUNEL Apoptosis Detection Assay

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Paraffin sections treated as above were deparaffinized with dimethylbenzene, hydrated with in a gradient of ethanol and washed with distilled water according to the manual for the TUNEL apoptosis detection kit (KGA7025-50 assays, KeyGEN Biotech. Co. Ltd., Nanjing, China). DNase I (5000 U) was added to some of the paraffin sections, which were regarded as the positive samples, and those without TdT were regarded as the negative samples. Under a microscope at 400X magnification (Leica DMI400, Germany), we found that the nuclei of the apoptotic cells in the positive samples appeared brown, and no such nuclei were present in the negative samples. Five non-overlapping fields in the cortex of each section were randomly observed, and the positive cells in these fields were counted. The results are presented as mean ±SD. The apoptotic cell index (ACI = apoptotic cells / total cells) was calculated and used as an indicator of the degree of apoptosis.
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4

Quantitative Histochemical Analysis of Lung Tissue

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For light microscopic study, lung tissues were fixed in neutral-buffered formalin and embedded in paraffin. Sections were prepared and stained with H&E or periodic acid–Schiff (PAS) stain. Images were acquired at 40× original magnification using a Leica DMI400 light microscope equipped with an Infinity3 charge-coupled device camera (Teledyne Lumenera). Quantification of PAS stain was performed using Fiji (ImageJ). Color deconvolution (haematoxylin periodic acid Schiff PAS) was performed on the image by setting a threshold to define the stained region. Regions of interest were drawn around the airway, excluding the luminal area. Staining of the region of interest was determined using the “limited to threshold” function and dividing by the total airway area.
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5

Histological Examination of Rat Brain

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Twenty-two hours after treatment, five rats from each group were anaesthetized and perfused with 200 ml normal saline and 200 ml 4% paraformaldehyde. Then, the brain was collected and post-fixed in 4% formaldehyde solution for 2 h, dehydrated, clarified, embedded in paraffin, and cut into sections (5 μm in thickness) to adhere to the slide (Leica 2035, Germany). The sections were routinely deparaffinized and stained with hematoxylin eosin (HE). The histological examination was performed under a light microscope; the nuclei in the sections appeared blue, while the cytoplasm appeared red. Five non-overlapping views of the cortex in each section were randomly observed under a microscope (Leica DMI400, Wetzlar, Germany) at 400-fold magnification for cell counting, and the results are presented as the means ± SD. The denatured cell index (the number of denatured cells/total cells) indicates the degree of damage.
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6

Immunohistochemical Analysis of pERK1/2 and ERK Expression

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Rabbit anti-rat pERK1/2 monoclonal antibody (1:100, # 4370) was purchased from Cell Signaling Tech. Co. Ltd., USA. Rabbit anti-rat ERK1/2 polyclonal antibody (1:100, BS-2637R) was provided by Bioss Biotech. Co. Ltd., Beijing, China. 3,3’-diaminobenzidine (DAB) and Power Vision two-step histo-staining reagent (PV-6001) were obtained from ZSGB-Bio. Co. Ltd., Beijing, China. Paraffin sections treated as above were de-waxed and washed according to routine procedures. The immunohistochemical procedures were performed in strict accordance with the manufacturer’s instructions. Under a microscope, the positive cells appeared with brown granules in the cytoplasm. Those sections to which 0.01 mmol/L PBS was added instead of primary antibody exhibited no positive responses. The positive cells were enumerated and averaged in five random views of cortex from four serial slices under a microscope at 400X magnification (Leica DMI400, Germany) The positive cell index (PCI = positive cells / total cells) was calculated and used to indicate the pERK1/2 and ERK expression levels.
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7

Histological Analysis of Neuronal Damage

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At 24 h after treatment, 5 rats were randomly selected from each group and anesthetized with 10% chloral hydrate and then perfused with 200 ml of 4% formaldehyde via the heart. The brains were removed and fixed in 4% formaldehyde for 2 h, soaked in distilled water for 4 h, dehydrated using a graded ethanol series, hyalinized via dimethylbenzene, embedded in paraffin, and sectioned at a thickness of 5 μm. The sections were adhered to glass slides treated with poly-L-Lysine, which were stored at 4°C. After routine de-waxing and washing, the histological sections were stained with hematoxylin for 5 min, the color was separated with 1% hydrochloric acid alcohol for 20 s, the section were back to blue with 1% ammonia for 30 s, dyed with eosin for 5 min, dehydrated in increasing concentrations of alcohol, hyalinized with dimethylbenzene, and sealed with neutral gum. Under a microscope at 400X magnification (Leica DMI400, Germany), 5 non-overlapping views of the cortex in each section were randomly chosen, and the cells in these sections were counted and presented as mean ± SD. The denatured cell index (DCI = denatured cell number/total cell number) was used to indicate the degree of damage.
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8

Rat Cortical Neuronal Apoptosis Assay

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Following 24 h of reperfusion, rats were sacrificed by CO2 asphyxiation. The cortices were washed with cold normal saline and fixed with 4% paraformaldehyde solution at 4°C overnight. Frozen sections (20 µm thickness) were used in TUNEL and immunohistochemical staining. TUNEL staining was conducted following the manufacturer's protocol (Boster Biological Technology, Ltd., Wuhan, China). The percentage of positive cells in the pathological images captured was calculated with Image Pro Plus software (version 6.0; Media Cybernetics, Inc., Rockville, MD, USA). The histopathological observations were documented using a light microscope (Leica DMI400; Leica Microsystems GmbH, Wetzlar, Germany) at ×400 magnification and photographed. Each experiment was replicated 3 times and the data were presented as the mean ± standard error of the mean (SEM).
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9

Immunohistochemical Analysis of Syn1 Expression

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Immunohistochemical staining was performed using a HistostainTM-Plus kit (Beijing Biosynthesis Biotech Co., Ltd.) according to the manufacturer's instructions. The dehydrated and transparent tissue block was placed in dissolved paraffin, and after the tissue block was completely immersed in paraffin, it was embedded and sliced. Paraffin sections were incubated with anti-Syn1 primary antibody (1:100; cat. no. ab8; Abcam) at 4°C overnight, and incubated with a biotinylated secondary antibody for 20 min at 37°C. The staining was examined and images were captured using a light microscope (Leica dMI400; Leica Microsystems GmbH) at x400 magnification. In total, five fields of view were randomly selected on each section to measure the expression level of Syn1. Each experiment was repeated three times.
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10

Immunohistochemical Analysis of TIA1 Expression

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Following peroxidase blocking for 30 min and 5% bovine serum albumin (BSA; Sigma-Aldrich; Merck KGaA) blocking for 2 h at room temperature, frozen sections (20 µm) of the brain were incubated with primary antibody (cat. no. ab140595; rabbit anti-TIA1 antibody 1:1,000; Abcam, Cambridge, MA, USA) overnight. Then these sections were incubated with secondary antibody (cat. no. ab6721; horseradish peroxidase-conjugated goat anti-rabbit; 1:5,000; Abcam) for 2 h at room temperature. The expression of TIA1 was detected using a Streptavidin Peroxidase Immunohistochemical staining kit (Tiangen Biotech Co., Ltd., Beijing, China) with DAB staining. The ratio of positive cells was calculated using Image Pro Plus software (version 6.0; Media Cybernetics, Inc.). The histopathological observations were documented by light microscopy (Leica DMI400; Leica Microsystems) at 400× magnification and images were captured. Each experiment was replicated 3 times and the data are presented as the mean ± SEM.
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