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7 protocols using mouse anti cd81

1

Characterization of Extracellular Vesicle Proteins

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Purified EVs were resuspended in not reducing Laemmli buffer for the detection of CD9 and CD63, in reducing buffer for ALIX and TSG101 and boiled for 5 min at 95°C. Proteins were resolved by SDS-PAGE and electro-transferred onto a nitrocellulose membrane. Non-specific sites were blocked with 5% (w/v) skimmed milk in T-TBS (tris-buffered saline: 150 mM NaCl, 20 mM TrisHCl, pH 7.4, and 0.5% Tween 20). Membranes were incubated overnight at 4°C with the following antibodies: mouse anti-CD9 (1:5000, BD Pharmingen, #555,370, San Jose, CA, the USA), mouse anti-CD63 (1:20,000; BD Pharmingen, #556,019, San Jose, CA, the USA), mouse anti-ALIX (1:500, Santa Cruz, #sc-271,975, Santa Cruz, CA, the USA), mouse anti-CD81 (1:5000; BD Pharmingen #555,675, San Jose, California, the USA), mouse anti-Apo AI (1:1000; AbCam #ab17278, Abcam Inc. Cambridge, the UK) and mouse anti-TSG101 (1:500, Novus Bio, #NB200-112, Littleton, CO, the USA). After washing with T-TBS, membranes were incubated with goat anti-mouse (1:10,000–1:50,000) IgG conjugated to horse-radish peroxidase for 45 min. Positive immunoreactive bands were detected by the enhanced chemiluminescence method (ImmobilonTM HRP substrate, #WBKLS0500, Millipore Corp., Billerica, MA, the USA).
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2

Exosomal Protein Analysis

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Each fraction of iodixanol density gradients was separated by SDS-PAGE and then transferred to a polyvinylidene difluoride membrane. The membrane was blocked and incubated with mouse anti-CD81 (BD Biosciences, San Jose, CA), mouse anti-CD63 antibody (Santa Cruz Biotechnology, Santa Cruz, CA), mouse anti-GM130 antibody (BD Biosciences), and mouse anti-cytochrome c antibody (BD Biosciences), followed by goat anti-mouse antibodies conjugated to horseradish peroxidase (Santa Cruz Biotechnology). The immunoreactive bands were visualized with a chemiluminnescent substrate.
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3

Western Blot Analysis of Vesicular Proteins

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One microgram of vesicular proteins was separated by SDS-PAGE and then transferred to a 0.2 µm polyvinylidene difluoride membrane. The membrane was blocked with 5% non-fat milk or 3% skim milk in Tris-buffered saline with 0.05% Tween-20, incubated with primary antibody followed by secondary antibody conjugated with horseradish peroxidase, and subjected to the enhanced chemiluminescence. The membrane was washed three times by Tris-buffered saline with 0.05% Tween-20 after each incubation. Goat anti-actin (1:1000 dilution, SC-1616), rabbit anti-GAPDH (1:1000 dilution, SC-257,780), goat anti-mouse IgG (1:5000 dilution, SC-516,102), goat anti-rabbit IgG (1:5000 dilution, SC-2004), donkey anti-goat IgG (1:5000 dilution, SC-2020) and goat anti-rat IgG (1:5000 dilution, SC-2006) antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Mouse anti-CD81 (1:1000 dilution, 555,675) and mouse anti-calnexin (1:1000 dilution, 610,523) antibodies were from BD Biosciences (San Diego, CA). Goat anti-ICAM1 (1:1000 dilution, BBA17) antibody was obtained from R&D Systems (Abingdon, UK). Mouse anti-60 S ribosomal protein L14 (RPL14) (1:1000 dilution, ab89095) antibody was from Abcam (Cambridge, MA). Mouse anti-tubulin (1:1000 dilution, T6074) antibody was from Sigma (St. Louis, MO). Rabbit anti-H2B (1:1000 dilution, 07–371) antibody was obtained from Millipore (Darmstadt, Germany).
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4

Extraction and Western Blot Analysis of NSPCs

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To obtain whole-cell extracts, NSPCs were harvested in a RIPA buffer (320 mM sucrose, 50 mM TRIS pH 7.5, 1% Triton X-100, 10% glycerol) and 1% of inhibitor of proteases cocktail (Sigma-Aldrich), incubated on ice for 30 min and centrifuged for 12 min at 13,000 g. Protein amount was quantified by Bradford assay (BioRad, Hercules, CA, USA) and 10–20 μg of protein was subjected to SDS-polyacrylamide gel electrophoresis and transferred overnight onto a polyvinylidene difluoride membrane (Immobilon-PSQ, Millipore). Membranes were blocked in 5% nonfat dry milk and then incubated with the following primary antibodies: rabbit anti-HSP90 (1:300, Santa Cruz Biotechnology, Dallas, TX, USA), mouse anti-TSG101 (1:200, Santa Cruz Biotechnology, Dallas, TX, USA), goat anti-CD63 (1:1000, BD Biosciences, San Jose, CA, USA), mouse anti-CD81 (1:500, BD Biosciences, San Jose, CA, USA). Blots were washed, incubated with the appropriate horseradish peroxidase-conjugated secondary antibodies (1:10,000, Jackson Immunoresearch, West Grove, PA, USA), then washed again and finally incubated in lumilight-enhanced chemiluminescence substrate (BioRad) and exposed to Chemidoc (BioRad). Densitometric analysis on scanned blots was performed using the ImageLab program (BioRad).
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5

TACSTD2 Gene Overexpression and Silencing

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A pcDNA3.1 vector carrying the TACSTD2 gene insert and a pcDNA3.1 vector carrying the siRNA-resistant TACSTD2 gene devoid of the 3’- and 5’-untraslated regions (UTR) (pTACSTD2) for rescue experiments were purchased from GenScript Corporation. siRNA for TACSTD2 gene silencing (siTACSTD2) targeting the 3’UTR of the TACSTD2 gene was performed using SMARTpool of 4 siRNAs (Dharmacon) (siTD2-A, 5’-GAGAAGAGGAGUUUGUUAAUU-3’; siTD2-B, 5’-ACAAGUAUCUGUAUGACAAUU-3’, siTD2-C, 5’-GCAAGUAACUGAAUCCAUUUU-3’, siTD2-D, 5’-GCACACACCAGGUUUAAUAUU-3’), which were transfected into parental and TACSTD2-overexpressing Huh 7.5 cells at 100nM final concentration using RNAiMAX (Invitrogen). The antibodies used include mouse anti-TACSTD2 (Santa Cruz), goat anti-TACSTD2, biotinylated goat anti-TACSTD2 and goat anti-E-cadherin, mouse IgG1 isotype control, mouse IgG2A isotype control, and normal goat IgG control (R&D systems), mouse anti-CLDN1 (Abnova), rabbit anti-CLDN1 and mouse anti-OCLN (Life Technologies), rabbit anti-OCLN (Abcam), rabbit anti-CD81 and mouse anti-ZO-1 (Thermo Scientific), mouse anti-SR-B1 (BD transduction laboratories), mouse anti-CD81 (BD Pharmingen), mouse anti-JAM-A (Hycult Biotech), mouse anti-HCV core (Anogen), rabbit anti-PKC substrate (Cell Signaling Technologies), and rabbit anti-alpha tubulin (Millipore). The HCV neutralizing mAb AR4A was a gift from Dr. Mansun Law.
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6

Antibody-based Visualization of HCV Proteins

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Antibodies used in this study included anti-NS5A (Austral Biologicals), anti-Core (Affinity Bioreagents Inc.), anti-bromodeoxyuridine (Sigma-Aldrich), anti-EEA1 or -CD63 or -LAMP-1 (Santa Cruz Biotechnology), mouse anti-CD81 (BD Pharmingen), rabbit anti-CD81 (Santa Cruz Biotechnology), anti-E2 (GeneTex, Inc.), anti-calnexin (Assay designs/Stressgen), and anti-mouse or -rabbit colloidal gold conjugates (Jackson ImmunoResearch Inc.). Rabbit polyclonal Abs against Core (RR8) and NS4B (RR12) were described previously [15] (link). Cy3-conjugated primary Ab to β-tubulin and nonspecific normal mouse immunoglobulin G (IgG) were obtained from Sigma-Aldrich. Secondary Abs against mouse, rabbit and goat were purchased from Invitrogen Molecular Probes.
Reagents used were Nocodazole (Sigma-Aldrich), taxol (paclitaxel; Sigma-Aldrich), BODIPY 493/503 (Invitrogen Molecular Probes), 4',6-Diamidino-2-phenylindole (DAPI; Invitrogen Molecular Probes) and wheatgerm agglutinin (WGA) Alexa Fluor 647 conjugate (Invitrogen Molecular Probes).
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7

Western Blot Analysis of Liver EVs

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Liver lysates (10 μg in total protein) and in vivo liver EVs (1 μg in total protein) were loaded onto SDS‐PAGE gels, and then transferred to PVDF membranes (Millipore, Bedford, MA, USA). The membrane was blocked and incubated with horseradish peroxidase‐conjugated secondary antibodies, goat anti‐rat IgG, goat anti‐hamster IgG, goat anti‐mouse IgG, and goat anti‐rabbit IgG (Santa Cruz Biotechnology, Santa Cruz, CA, USA). The immunoreactive bands were visualized using enhanced chemiluminescence substrate (Thermo Scientific, Hudson, NH, USA). Rat anti‐CD9, mouse anti‐CD81 and mouse anti‐GM130 antibodies were from BD Biosciences (BD Biosciences, San Jose, CA, USA). Rabbit anti‐histone H2B antibody was purchased from Upstate Biotechnology (Lake Placid, NY, USA).
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