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Nativepage gel system

Manufactured by Thermo Fisher Scientific

The NativePAGE Gel system is a laboratory equipment used for the separation and analysis of protein complexes in their native, non-denatured state. It is designed to preserve the structure and function of proteins during electrophoresis, allowing for the study of protein-protein interactions and the characterization of protein complexes.

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4 protocols using nativepage gel system

1

Two-Dimensional Blue Native PAGE Analysis

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Blue Native (BN)/PAGE was performed using the Invitrogen NativePAGE Gel system with minor modifications. In brief, mitochondria from pooled retina were enriched and used for BN-PAGE gel as described27 (link). Electrophoresis was performed according to the manufacturer’s specifications (Invitrogen). BN-PAGE strips were equilibrated and applied to the 2D SDS gel as described by Invitrogen. Samples were separated in the second dimension and transferred to PVDF membranes (Immobilon; Millipore, Burlington, MA) using the semitransfer system (Bio-Rad, Hercules, CA). The following antibodies were used: anti-Myc [Y69] (ab32072, abcam, 1:500), anti-NDUFS4 [2C7CD4AG3] (ab87399, abcam, 1:1000) and anti-NDUFB6 [21C11BC11] (ab 110244, abcam, 1:1000). Secondary probing with anti-mouse (32230, ThermoFisher, 1:5000) or anti-rabbit HRP-conjugated antibodies (32260, ThermoFisher, 1:5000) was performed for 1 h, followed by detection using ECL reagents (ThermoFisher) and a FUJI Film Imaging system.
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2

Two-Dimensional Blue Native PAGE Analysis

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Blue Native (BN)/PAGE was performed using the Invitrogen NativePAGE Gel system with minor modifications. In brief, mitochondria from pooled retina were enriched and used for BN-PAGE gel as described27 (link). Electrophoresis was performed according to the manufacturer’s specifications (Invitrogen). BN-PAGE strips were equilibrated and applied to the 2D SDS gel as described by Invitrogen. Samples were separated in the second dimension and transferred to PVDF membranes (Immobilon; Millipore, Burlington, MA) using the semitransfer system (Bio-Rad, Hercules, CA). The following antibodies were used: anti-Myc [Y69] (ab32072, abcam, 1:500), anti-NDUFS4 [2C7CD4AG3] (ab87399, abcam, 1:1000) and anti-NDUFB6 [21C11BC11] (ab 110244, abcam, 1:1000). Secondary probing with anti-mouse (32230, ThermoFisher, 1:5000) or anti-rabbit HRP-conjugated antibodies (32260, ThermoFisher, 1:5000) was performed for 1 h, followed by detection using ECL reagents (ThermoFisher) and a FUJI Film Imaging system.
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3

Recombinant Expression and Purification of EmuDdi1

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To express the recombinant EmuDdi1 protein, a pair of specific primers containing Sal I and Xho I restriction sites (EmuDdi1-F: CGAGCTCATGAGGCTTTCTTT CGTTC and EmuDdi1-R: CCCTCGAGACTAGGGGAG A CTGCTCATG) were designed and synthesized. The EmuDdi1 coding sequence was amplified and cloned into the expression vector pET-28a (+). Expression was induced by 1mM IPTG at 28°C. The recombinant EmuDdi1 protein was purified by affinity chromatography on a HiTrapTM column (GE), and then dialyzed against PBS at 4°C for 12 h. The purified protein was analyzed on 12.5% SDS-polyacrylamide gels and stained with Coomassie Brilliant Blue (Solarbio, China). Non-denaturing PAGE (NativePAGE™ Gel system, ThermoFisher) was used to analyze the dimer of the recombinant EmuDdi1. The concentration of recombinant EmuDdi1 protein was determined with the BCA protein assay kit (ThermoFisher) and was stored at −80°C until used.
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4

Native Gel Electrophoresis of BAT Mitochondria

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Frozen pellets of 200 μg BAT mitochondria were lysed in 100 μL of NativePAGE sample buffer, supplemented with 1× HALT protease and phosphatase inhibitor cocktail and 1% n-dodecyl-β-D-maltoside (DDM), using a NativePAGE Sample Prep kit (Thermo Fisher). Aliquots of 20 μg lysed mitochondria were supplemented with Coomassie G-250 to final concentration of 0.25%, then run out on native 4–16% bis–tris gels using the Native PAGE gel system (Thermo Fisher). Gels were treated with Fix Solution (40% methanol, 10% acetic acid), microwaved for 45 s, and destained with 8% acetic acid for up to 5 h before imaging.
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