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5 protocols using ripa protein lysate

1

Western Blot Analysis of PCNA and p21

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The protein precipitates were extracted using an RIPA protein lysate (cat no. 89900, Thermo Fisher) containing a protease inhibitor phenylmethylsulfonyl fluoride (cat no. 36978, Thermo Fisher, USA). Protein concentrations were determined using a BCA kit (ThermoFisher, USA). Then, the protein was subjected to SDS polyacrylamide electrophoresis and transferred onto a PVDF membrane (cat no. IPVH00010, Millipore). The PVDF membrane was blocked with 5% skimmed milk at room temperature. Then, the PVDF membranes were incubated overnight at 4 C with primary antibodies diluted with 5% skimmed milk. The used primary antibodies were mouse anti-PCNA monoclonal antibody (1:2000, cat no. ab29, Abcam, USA) and rabbit anti-p21 polyclonal antibody (1:1000, cat no. 10355-1-AP, Proteintech, Chian). Rabbit anti-vinculin monoclonal antibody (1:5000, cat no. ab129002, Abcam, USA) was used as the loading control. Then, the appropriate secondary antibody (CoWin Biosciences) was incubated with the PVDF membranes based on the genetic origin of the primary antibody. A gel imaging system was used to scan the protein bands using ECL reagents, and vinculin was used as an internal reference.
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2

Modulation of Cardiomyocyte Survival Signaling

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AC16 human cardiomyocytes, sourced from the BeNa Culture Collection (Beijing, China). MiR-449b-5p mimics, its inhibitor, negative control (NC), si-BCL2L13, si-NC, and BCL2L13-overexpressing plasmid (pcDNA3.1-BCL2L13) and vector control were purchased from Ribo Biological Co., Ltd. (Guangzhou, China). CCK-8 reagent (Beyotime, Shanghai, China), LDH Kit (Beijing Solarbio Science & Technology Co., Ltd.) and FITC-Annexin V/PI kit (BD Biosciences, San Jose, CA, USA) were purchased from corresponding companies. MDA (ab287797), ROS (ab287839), SOD (ab178012), specific primary antibodies against BCL2L13 (ab203516), Bcl-2 (ab196495), Bax (ab182733), PI3K (ab133595), p-PI3K (ab182651), AKT (ab8805), p-AKT (ab8933) and GAPDH (ab9485) were provide by Abcam (Cambridge, UK). Horseradish peroxidase-conjugated secondary antibodies (SC-2054 SC-2054) was purchased from Santa Cruz Inc., (Santa Cruz, CA, USA). RIPA protein lysate was from Thermo Fisher Scientific, Inc.) and BCA protein concentration kit was from Beyotime. Other inorganic reagents were purchased from Sigma-Aldrich.
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3

Quantifying Bladder Tissue Protein Levels

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RIPA protein lysate (Thermo Fisher Scientific, USA) was used to lyse bladder tissues and HMC-1 cells. After centrifugation at 12000 rpm for 15 minutes at 4° C, the concentration of protein was measured by BCA kit (Beyotime, Shanghai, China). Protein was added to the polyacrylamide gel for electrophoresis, and then protein on the gel was transferred to the polyvinylidene fluoride membrane (PVDF). After blocking with 5% BSA for 1 hour, rabbit monoclonal BTK (1:1000; Abcam, UK) was added to the membrane. After incubating overnight at 4° C, Goat Anti-Rabbit IgG H&L was added to the membrane and incubated for 1 hour at room temperature. The ECL substrate kit was used for the colour development of the band. Gel imager (Gel Doc XR+; Bio-Rad, USA) was used for observation and photography. Image J software (Version 1.0; National Institutes of Health, US) analyzed the grey value of the band and calculated the relative expression level of the protein.
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4

Protein Expression Analysis of Cytokines

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Briefly, total proteins were extracted by using RIPA protein lysate (89900, Invitrogen, USA). 40 μg protein was used to perform SDS-PAGE assay. Primary antibodies IL-10 (1 : 1000, Santa Cruz Company, USA), IL-12 (1 : 500, Santa Cruz Company, USA), IFN-γ (1 : 500, Santa Cruz Company, USA), TGF-β (1 : 250, Santa Cruz Company, USA), and VEGF (1 : 500, Santa Cruz Company, USA) were employed to incubate with activated membrane overnight at 4°C. GAPDH (1 : 5000) served as the internal control. Then, the bands were detected by incubation with HRP conjugate secondary antibody at room temperature for 1 h. The protein expression was conducted using an enhanced chemiluminescence reagent and the images were observed by a gel imaging analysis system.
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5

Western Blot Analysis of EMT Markers

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Total proteins were extracted by using RIPA protein lysate (89900, Invitrogen, USA). 30 μg of total protein was separated by 10% SDS-PAGE. Primary antibodies against E-cadherin (1 : 1000, AF0131, Affinity Biosciences, USA), α-SMA (1 : 1000, XBT-1, Affinity Biosciences, USA), ZEB2 (1 : 1000, AF5278, Affinity Biosciences, USA), GAPDH (NCI5079, Good Here, China), CD9 (1 : 1000, bs-2489R, Bioss, China), CD63 (1 : 1000, GTX41877, GeneTex, USA), and CD81 (1 : 800, GTX41794, GeneTex, USA) were employed to incubate with activated membrane overnight at 4°C. Then, the bands were detected by incubation with HRP conjugate (1 : 5000, BA1054, Boster, China) secondary antibody at room temperature for 2 h. Chemiluminescence detection was conducted using an enhanced chemiluminescence reagent (P0018AS, Beyotime, China), and the images were observed by a gel imaging analysis system (UniCel DxI800, Beckman Coulter, USA).
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