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8 protocols using penicillin

1

Characterization of Human Cancer Cell Lines

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A549 (CCL-185)- collected from a 58-year old Caucasian male, it is a hypotriploid human cell line with the modal chromosome number 66 which can be found in 24% of cells, NCI-H1299 (CRL-5803)- established from a lymph node of 43-year old White male patient with lung cancer who received prior radiation therapy, MDA-MB-231(HTB-26)- obtained from a 51-year old White female, it is an aneuploid female with a modal chromosome number 64, and MDA-MB-468 (HTB-132)- isolated from a pleural effusion of a 51-year old Black woman with a metastatic breast adenocarcinoma, an aneuploid female with most chromosome counts in the hypertriploid range with a modal chromosome number 64. The A549, MDA-MB-231, and MDA-MB-468 cells were cultured in high glucose Modified Eagle Medium (DMEM) (Genesee Scientific, San Diego, CA, USA) while NCI-H1299 cells were cultured in RPMI 1640 (Genesee Scientific, San Diego, CA, USA). All media were supplemented with 10% heat-inactivated fetal bovine serum (Genesee Scientific, San Diego, CA, USA), 100 U/mL penicillin and 100 μg/mL streptomycin (Genesee Scientific, San Diego, CA, USA). The cultures were incubated at 37ºC in 5% CO2/95% humidified air. In all cases, treatment with experimental compounds was done in basal medium supplemented with 5% heat-inactivated fetal bovine serum.
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2

Characterization of Firefly Luciferase-Expressing Mouse Tumor Cell Lines

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Three different firefly luciferase-expressing mouse cancer cell lines were used: 4T1-Luc2 (mammary carcinoma), B16F10-Luc2 (cutaneous melanoma), and MOC2-Luc2 (oral squamous cell carcinoma). The 4T1-Luc2 cells were cultured in Dulbecco’s modified eagle medium (DMEM, high in glucose with sodium pyruvate and glutamine, Fisher Scientific) with 10% fetal bovine serum (Genesee Scientific) and 500 µg/mL of zeocin (InvivoGen). The B16F10-Luc2 cells cultured in RPMI 1640 (Gibco) containing 10% fetal bovine serum (Genesee Scientific). The media was supplemented with 100 units/mL penicillin and 100 μg/mL streptomycin (Genesee Scientific). The MOC2-Luc2 cells were cultured in HyClone™ Iscove’s Modified Dulbecco’s Medium (IMDM) and Hams F12 Nutrient Mixture (Fisher Scientific) at a 2:1 mixture with 5% fetal bovine serum, 1% penicillin/streptomycin, 5 ng/mL epidermal growth factor, 400 ng/mL hydrocortisone, and 5 mg/mL insulin (MilliporeSigma). All cells were incubated at 37°C in 5% CO2 atmosphere and passaged 1:10 when 75-90% confluent. Cell lines underwent authentication via short tandem repeat analysis and PCR-based interspecies contamination testing performed by a third-party purveyor (CellCheck Mouse 19; IDEXX), and also underwent routine Mycoplasma testing.
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3

Cancer Cell Line Culturing and Antibody Verification

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All cell lines were purchased from American Type Culture Collection (ATCC, Manassas, VA, USA). MDA-MB-231, A549, and MIAPaCa-2 cells were cultured in high glucose Modified Eagle Medium (DMEM, Genesee Scientific, San Diego, CA, USA). NCI-H1299 cells were cultured in RPMI 1640 (Genesee Scientific, San Diego, CA, USA). All media were supplemented with 10% heat-inactivated fetal bovine serum (Genesee Scientific, San Diego, CA, USA), 100 U/mL penicillin, and 100 μg/mL streptomycin (Genesee Scientific, San Diego, CA, USA). The cultures were incubated at 37 °C in 5% CO2/95% humidified air. In all cases, treatment with experimental agents was done in basal medium supplemented with 5% heat-inactivated fetal bovine serum. Antibodies specific to B-Raf (Cat. #14814), Phospho-B-Raf (Ser445) (Cat. #2696), c-Raf (Cat. #53745), Phospho-c-Raf (Ser338) (Cat. #9427), MEK1/2 (Cat. #8727), Phospho-MEK1/2 (Ser217/221) (Cat. #9154), p44/42 MAPK (Erk1/2) (Cat. #4695), RSK1/RSK2/RSK3 (Cat. #9355), Phospho-p90RSK (Ser380) (Cat. #11989), GAPDH (HRP Conjugate) (Cat. #8884), α-Actinin (HRP Conjugate) (Cat. #12413), and anti-rabbit IgG, HRP-linked Antibody (Cat. #7074) were purchased from Cell Signaling Technology (Danvers, MA, USA).
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4

P19 Mouse Embryonal Carcinoma Cell Culture

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P19 mouse embryonal carcinoma cells were purchased from the American Type Culture Collection and cultured in growth medium comprised of Alpha Minimum Essential Medium (Genesee Scientific, El Cajon, CA, USA) supplemented with bovine calf serum (BCS; 7.5% v/v; American Type Culture Collection, Manassas, VA, USA), fetal bovine serum (FBS; 2.5% v/v; Genesee Scientific), penicillin (100 U/mL; Genesee Scientific), and streptomycin (100 μg/mL; Genesee Scientific). Cells were grown in a 37 °C humidified incubator maintained at 5% CO2.
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5

Nonsense-Mediated Decay Inhibition in LCLs

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Human LCLs were obtained from the Coriell Institute. The cells were grown in suspension in RPMI 1640 medium (Genesee Scientific) supplemented with 15% fetal bovine serum, 100 U/ml penicillin, and 100 µg/ml streptomycin and maintained at 37°C with 5% CO2. To test the impact of NMD inhibition, two million cells of each LCL (GM19204, GM18508, GM19193, GM19238, GM12878, and S003659) were grown overnight and subsequently treated with 100 µg/ml of emetine (Sigma) for 7 h (Noensie and Dietz 2001 (link)). Parallel cultures were left untreated and grown at standard conditions. HeLa cells were grown in Dulbecco's Modified Eagle Medium, High Glucose, with L-Glutamine (Genesee Scientific) supplemented with 10% fetal bovine serum (Gibco, Life Technologies), penicillin (100 U/ml), and streptomycin (100 µg/ml) (Gibco, Life Technologies) at 37°C with 5% CO2.
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6

Endothelial Cell Line BSO Treatments

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Endothelial cell lines (mouse aortic endothelial cells; MAECs and mouse vena cava endothelial cells; VCECs) were cultured in Dulbecco’s modified Eagle Media-DMEM (Caisson labs, UT) with 10% Fetal bovine serum-FBS (Caisson labs, UT), added L-glutamine (Genesee Scientific, CA), penicillin and streptomycin (Genesee Scientific, CA) at 37oC in 5% CO2. Cells were grown to confluence followed by BSO (Sigma, MO) treatments of increasing concentrations (0, 5, 25, 50, 75, and 100 μM) for 19hrs in starvation media (with 0.5% FBS).
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7

Culturing HEK293 Cells in DMEM

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Human embryonic kidney cells (HEK293) were maintained in complete Dulbecco’s Modified Eagle Medium (Thermo Fisher/Gibco, Manassas, VA, USA) supplemented with 10% fetal bovine serum (Thermo Fisher/Gibco Manassas, VA, USA), 1% penicillin and streptomycin (Genesee Scientific, El Cajon, CA, USA) at 37 °C and 5% CO2.
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8

Inhibiting Nonsense-Mediated Decay in Human LCLs

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Human LCLs were obtained from the Coriell Institute. The cells were grown in suspension in RPMI 1640 medium (Genesee Scientific) supplemented with 15% fetal bovine serum, 100 U/mL penicillin, and 100 µg/mL streptomycin and maintained at 37°C with 5% CO2. To test the impact of NMD inhibition, two million cells of each LCL (GM19204, GM18508, GM19193, GM19238, GM12878, and S003659_Chimp1) were grown overnight and subsequently treated with 100 µg/ml of emetine (Sigma) for seven hours (Noensie and Dietz 2001) . Parallel cultures were left untreated and grown at standard conditions. HeLa cells were grown in Dulbecco's Modified Eagle Medium (DMEM), High Glucose, with L-Glutamine (Genesee Scientific) supplemented with 10% fetal bovine serum (Gibco, Life Technologies), penicillin (100 U/mL) and streptomycin (100 µg/mL) (Gibco, Life Technologies) at 37°C with 5% CO 2 .
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