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25 protocols using zen2112

1

Dynamic Light Scattering of PanD Proteins

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Dynamic light scattering experiments of PanDWT and the mutant PanD127TRASC131 in the absence or presence of 200 µM POA were carried out using the Malvern Zetasizer Nano ZS spectrophotometer. The protein was incubated for 40 min with drug before measurement. The samples were measured in a low-volume quartz batch cuvette (ZEN2112, Malvern Instruments) using 12 µL of 1 mg/mL of PanD in 50 mM Tris (pH 7.5) buffer containing 200 mM NaCl. After 60 s equilibration time at 298 K, the backscattering at 173° was detected for all proteins. Scattering intensities were analyzed using the instrument software to calculate the hydrodynamic diameter (DH), size, and volume distribution.
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2

Dynamic Light Scattering of Mab PanD

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DLS of Mab PanD was carried out at concentrations of 1, 2, 4 and 8 mg/ml with a Malvern Zetasizer Nano ZS spectrophotometer. The experiments were performed in a low-volume quartz batch cuvette (ZEN2112, Malvern Instruments) using 12 μl of the respective protein solution at 25 °C. After 60 s equilibration time, the backscattering at 173° was collected for the sample. Scattering intensities were analyzed using the in-built software, Zetasizer (version 7.11) to determine the hydrodynamic radius of Mab PanD at each protein concentration.
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3

Thermal Ramp DLS Characterization

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Dynamic light scattering (DLS) thermal ramp measurements were made with a Zetasizer Ultra (Malvern Panalytical Ltd., Malvern, UK) using an He–Ne laser at a wavelength of 633 nm and maximum power of 10 mW. Three repeat measurements of each sample were made at each temperature using backscatter detection and a low-volume quartz batch cuvette (ZEN2112 Malvern Panalytical Ltd., Malvern, UK). The instrument settings were optimized automatically by means of the ZS XPLORER software (Malvern Panalytical Ltd., Malvern, UK).
The thermal ramps covered a temperature range of 45 to 75 °C with 1 °C increments, with size measurements collected at every 1 °C increase and a particle concentration measurement taken every 5 °C.
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4

Nanoparticle Characterization of sEV

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To determine the particle size and concentration, 50 µl of sEV fraction was placed in low-volume quartz batch cuvette ZEN2112 (Malvern Panalytical Ltd, UK) and measured using Multi-angle dynamic light scattering technique (MADLS), Zetasizer Ultra (Malvern Panalytical Ltd, UK) at a constant temperature of 25 °C. The light scattering data were collected at three angles, 173°, 90°, and 13°, and evaluated using ZS Xplorer software version 2.50 (Malvern Panalytical Ltd, UK). The hydrodynamic diameter, polydispersity index, and concentration results are reported as mean value (n = 3) ± standard deviation.
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5

Nanoparticle Size and Concentration Characterization

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Size and concentration characterization was done with Multi‐angled dynamic light scattering technique (MADLS®). Approximately 50 µL of the sample suspension was placed in low volume quartz batch cuvette ZEN2112 (Malvern Panalytical Ltd, UK) and measured using Zetasizer Ultra (Malvern Panalytical Ltd, UK) equipped with HeNe Laser (633 nm) and three detection angles: 173°, 90° and 13°. The measurements were performed at a constant temperature of 25°C. Obtained data were evaluated using ZS Xplorer software version 1.5.0.163 (Malvern Panalytical Ltd, UK).
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6

Exosome Characterization by Dynamic Light Scattering

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Approximately 50 µL of the exosomal suspension were placed in a low volume quartz batch cuvette ZEN2112 (Malvern Pananalytical Ltd., Malvern, UK) and measured using the multi-angled dynamic light scattering technique (MADLS®) on Zetasizer Ultra (Malvern Pananalytical Ltd.) at a constant temperature of 25 °C. The device was equipped with a HeNe Laser (633 nm) and three detectors at the following angles: 173° (backscatter), 90° (side scatter), and 13° (forward scatter). The measured data were evaluated using ZS Xplorer software version 1.50 (Malvern Pananalytical Ltd.). The measured values included hydrodynamic size, polydispersity index (PdI), and concentrations of exosomes.
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7

Thermal Ramp Particle Characterization

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Thermal ramps, covering a temperature range of 10 to 75 °C with 1 °C increment, were carried out using a Zetasizer Ultra (Malvern Panalytical Ltd., Malvern, UK) using a He-Ne laser at a wavelength of 633 nm and maximum power of 10 mW. Size measurements were collected at every 1 °C increment using backscatter detection and a particle concentration measurement taken every 5 °C using a low-volume quartz batch cuvette (ZEN2112 Malvern Panalytical Ltd., Malvern. UK).
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8

Particle Size Characterization by DLS

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The suspensions were measured using low-volume quartz batch cuvette, ZEN2112 (Malvern Panalytical Ltd, UK), at the constant temperature of 25 °C, and using temperature ramp in a range from 20 to 65 °C with the step of 5 °C for stability measurements. Multi-Angle Dynamic Light Scattering measurements (MADLS®) were performed with a Zetasizer Ultra instrument (Malvern Panalytical Ltd, UK). The instrument was equipped with a 633-nm HeNe laser and had detection angles at 173°, 90°, and 13°, respectively. The size distribution, z-average diameter, polydispersity index (PDI), and particle concentration (particles/ml) were obtained using ZS Xplorer software (Malvern Panalytical Ltd, UK).
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9

Dynamic Light Scattering of Atg11 Proteins

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Proteins used for DLS measurement were prepared at the concentration of 1 mg·mL−1 in the buffer consisting of 20 mm Tris/HCl pH 8.0, 150 mm NaCl for Atg11_N and Atg11_C and that consisting of 20 mm Tris/HCl pH 8.0, 300 mm NaCl, 1 mm DTT for full‐length Atg11. Proteins were centrifuged at 15 000 g for 15 min before measurement. The samples were loaded into a quartz batch cuvette ZEN2112 (Malvern, Worcestershire, UK), and three continuous measurements were taken at 25 °C using a Zetasizer Nano S system (Malvern). The averages of three measurements are shown in Fig 1B–D.
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10

Protein Aggregation Size Analysis

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Aggregation propensity and average particle size of the test proteins were determined using a Zetasizer Ultra device and ZS Xplorer software (Malvern Panalytical) by MADLS. Samples were loaded into a low-volume quartz cuvette (Malvern Panalytical, ZEN2112) at a concentration of 1 mg/ml. Triplicate measurements were taken for each sample. Particle size of aldolase (158 kDa) was used as reference.
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