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Isopropyl 1 thio β d galactopyranoside iptg

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Isopropyl-1-thio-β-D-galactopyranoside (IPTG) is a synthetic chemical compound used as an inducer in molecular biology. It is a structural analogue of the natural inducer allolactose and is commonly used to induce the expression of genes under the control of the lac operon in bacterial cells.

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6 protocols using isopropyl 1 thio β d galactopyranoside iptg

1

Purification of Galactose-Binding Protein

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Isopropyl-1-thio-β-D-galactopyranoside (IPTG) and protease inhibitor cocktail were purchased from Sigma-Aldrich (St. Louis, MO, USA). Anion-exchange chromatography (Mono Q, 5/50 GL) and size-exclusion (Superdex 200, 26/600) columns were purchased from GE healthcare (Fairfield, Connecticut, USA). Teflon beads with a diameter of 2.38 mm were purchased from SmallParts. FSB [(E,E)-1-fluoro-2,5-bis(3-hydroxycarbonyl-4-hydroxy)styrylbenzene] and curcumin were purchased from Santa Cruz Biotechnology and Sigma-Aldrich, respectively. HS-68 was synthesized according to published procedures19 (link).
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2

Bacterial Glycoprotein Production and Purification

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SDB1 strain transformed with C. jejuni PglB (pMAF10), AcrA (pIH18), and BPs type II O-antigen (pEQ3) was grown overnight at 37°C. Culture was reinnoculated 1/33 into fresh LB media using a culture/flask ratio 1:10. After 2 h at 37°C with shaking at 200 rpm, the cultures were induced with 0.1 mM isopropyl 1-thio-β-D-galactopyranoside (IPTG; Sigma) and 0.2% (w/v) L-(+)-arabinose (MP Biomedicals). To increase the glycosylation yield in SDB1, we also added MnCl2 (4 mM). Five hours after induction at 37°C, arabinose was added again to ensure PglB expression. Cells were harvested by centrifugation after an overnight induction period and the periplasmic extract containing the glycoproteins was extracted using a lysozyme treatment as described previously (Iwashkiw et al., 2012 (link)). For purification, the periplasmic fraction was equilibrated with 1/9 vol 10× loading buffer (0.1 M imidazole, 3 M NaCl, 0.2 M Tris-HCl, pH 8.0) and subjected to a Ni2+affinity chromatography as described (Iwashkiw et al., 2012 (link)). Purified protein was quantified by Bradford assay (BioRad).
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3

Protein Expression and Purification of NTHI Antigens

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For protein expression and purification, one single colony of E. coli BL21(DE3) strain expressing NTHI antigens was inoculated in LB plus ampicillin and grown overnight at 37°C, diluted in fresh LB medium and grown at 30°C to an OD600 of 0.6-0.8. Protein over-expression was induced by the addition of 1 mM isopropyl-1-thio-β-D-galactopyranoside (IPTG, Sigma) for 3 hours. Recombinant 6 x His-fusion proteins was purified by affinity chromatography on Ni2+-conjugated chelating fast-flow Sepharose 4B resin (Pharmacia). Purity was checked by SDS-PAGE electrophoresis staining with Coomassie blue. Protein concentration was determined using the bicinchoninic acid (BCA) assay (Thermo Scientific). Endotoxin content was assessed using the limulus amoebocyte lysis (LAL) test.
Antigens were adsorbed onto alum by incubating 10 μg of each antigen with 2 mg/ml aluminum hydroxide, with slow stirring for few hours at room temperature (RT). The pH and osmolality of the formulation and antigen absorption were determined.
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4

Purification and binding assay of RIG-I

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Escherichia coli BL21(DE3) cells were transformed with pET-32a(+)-zbRIG-I or pET-32a(+) plasmids, respectively. Then, cells were grown in 50 ml of LB medium (Beyotime) containing 0.5 mM isopropyl-1-thio-β-D-galactopyranoside (IPTG) (Sigma) at 18°C overnight with shaking at 120 rpm. Cells were pelleted by centrifugation at 4,500 rpm for 30 min and lysed in 10 ml of lysis buffer (100 mM sodium phosphate, pH 8.0, 600 mM NaCl, and 0.02% Tween-20) (Beyotime) via sonication on ice. The sonicated mixture was centrifuged at 15,000 rpm at 4°C for 20 min, and then the supernatant was affinity-purified with Dynabead His-Tag magnetic beads (Invitrogen) according to the manufacturer's instruction.
His pull-down assays were performed as described previously with some modifications (20 (link)). His-zbRIG-I-magnetic beads were incubated with the lysates of HEK 293T cells transfected with pCMV-Flag-zbTRIM25 or pCMV-Flag empty vectors on a roller, respectively. After incubation at 4°C overnight, the magnetic beads were washed three times with lysis buffer to remove unbound His-zbRIG-I and then analyzed via Western blotting using anti-Flag or anti-His antibodies. His tag protein alone was served as a negative control.
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5

Purification of Recombinant Protein EhP3

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Protein construct was expressed in BL21(DE3) E. coli cells (Novagen). Transformed BL21(DE3) cells were cultured in Luria Bertani broth at 37°C and later induced with 1mM isopropyl-1-thio-β-D-galactopyranoside (IPTG) (Sigma) when the OD600 was around 0.6–0.8 and incubated for 4 hours post induction at 37°C. The recombinant protein EhP3 was expressed in a soluble form in the bacterial cytosol. The total induced cell pellet was harvested by high speed centrifugation and resuspended in lysis buffer (50 mM Tris pH 8.0, 300 mM NaCl, 10 mM Imidazole, containing 0.5 mg/ml lysozyme and protease inhibitors). Protein was then purified from the supernatant by immobilized metal affinity chromatography (Ni-NTA, G-Biosciences) with 250 mM imidazole in 50 mM Tris (pH 8.0) and 300 mM NaCl. The Ni-NTA purified fractions was analyzed by SDS–PAGE and further purified to homogeneity on Q-Sepharose column (XK16/20, GE Healthcare) by anion exchange chromatography using a step gradient of NaCl (100–500 mM) and 50 mM Tris (pH 8.0) as described previously [55 (link), 56 (link)]. The purified Q-Sepharose elutes was then dialyzed and concentrated using 3 kDa molecular weight cut-off centricons (Millipore) and purity and concentration of the recombinant protein was determined by SDS-PAGE and BCA respectively.
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6

GST-Mediated Protein Interaction Assay

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GST-mediated pull-down assay was performed using the Profound Pull-down GST Protein:Protein Interaction kit (Pierce, Rockford, IL). GST and GST-6RCTs plasmids were transformed into bacterial strain BL21 (DE3) and their protein expressions were induced by adding 0.5 mM isopropyl 1-thio-β-D-galactopyranoside (IPTG, Sigma) at 25℃ during mid-log phase. GST and GST-6RCTs proteins were immobilized by glutathione gel. To prepare prey protein, Flag-Nova-1 plasmid was transfected into HEK293 cells and cell lysates were harvested after 24 h of transfection. For GST pull-down assay using rat brain lysates, the lysates were prepared from age- and weight controlled adult male SD rats (60–70 days old, 230–260 g) as previously described [17 (link)]. Prepared cell or brain lysates were incubated with immobilized GST proteins. Bound proteins were eluted by boiling for 10 min at 95℃ in SDS sample buffer followed by immunoblotting with anti-Nova-1 (Upstate Biotechnology Inc., Lake Placid, NY) and anti-GST antibodies (Novagen, Madison, WI).
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