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5 protocols using sc 365846

1

Immunocytochemical Profiling of Proliferative LSCs

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Immunocytochemistry for BrdU labeling of proliferative LSCs was performed as in our previous study [25 (link)]. Deparaffinized mouse eye sections were blocked with 10% goat serum and 5% BSA in PBS containing 0.1% Tween-20 for 1 h at RT. The eye sections were double-stained with antibodies to rabbit polyclonal anti-ΔNp63α antibody (1:100; BioLegend) and monoclonal anti-mouse Hes1 antibody (1:100; ab87395; Abcam) or monoclonal anti-mouse Smad7 antibody (1:100; sc-365846; Santa Cruz Biotechnology) at 37 °C for 2 h. The sections were then incubated with rhodamine-conjugated donkey anti-mouse IgG antibody and fluorescein isothiocyanate (FITC)-conjugated donkey anti-rabbit IgG antibody (1:500; Santa Cruz Biotechnology) for 1 h at RT. Nuclei were monitored by counterstaining with Hoechst 33,258 for 7 min. Images were captured using a Zeiss epifluorescence microscope(Oberkochen, Germany) with a charge-coupled device (CCD) camera and photographs taken using the Axiovert software.
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2

TRIM37-SMAD7 Interaction and Ubiquitination

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For coIP, cells were harvested in RIPA buffer, and 2 mg of protein lysate was pre-cleared as described above, immunoprecipitated with anti-TRIM37 (Abcam, ab264190), anti-SMAD7 (Santa Cruz Biotechnology, sc-365846), or control immunoglobulin G (IgG) (Santa Cruz Biotechnology, sc-2027) overnight at 4°C and immunoblotted as described above.
For the ubiquitination assay, SMAD7 from control or TRIM37 overexpressing LX-2 cells was immunoprecipitated as described above with 1 μg of IgG or anti-SMAD7. The ubiquitination in SMAD7 was probed using anti-ubiquitin antibody (Abcam, ab7780) by western blotting as described above.
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3

Quantifying Smad Signaling in MEPM Cells

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Total cellar protein extraction from different treated MEPM cells using 5 × sodium dodecyl sulfate-lysis buffer supplemented with protease inhibitors (M250; Amresco, Ohio). Protein concentration was determined using a standard BSA protein assay (DingGuo, Beijing, China). Then 40 μg of proteins were fractionated on 12% sodium dodecyl sulfate–polyacrylamide gel electrophoresis and transferred to nitrocellulose membranes. After blocking with 5% nonfat milk, the membranes were immunoblotted with the primary antibodies: Smad2 (ab71109; Abcam, Massachusetts), p-Smad2 (sc101801; Santa Cruz, California), Smad3 (BM3559; Boster Biotech, Wuhan, China), p-Smad3 (GD-CZ5616 R, Santa Cruz, California), Smad4 (PB0446; Boster Biotech, Wuhan, China), and Smad7 (sc-365846; Santa Cruz, California). -Actin was probed as a loading control. Then membranes were washed and incubated with horseradish peroxidase–conjugated secondary antibody (sc-2004 or sc-2005; Santa Cruz, California). Western blot analysis was performed using the Odyssey Infrared Imaging System (Li-Cor, Lincoln, Nebraska).
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4

Analysis of Smad Signaling Proteins

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Total lysates from different treated MEPM cells using 5× SDS-lysis buffer supplemented with proteases inhibitors (M250, Amresco, Ohio) were determined. Protein concentration was determined using a standard BSA protein assay (Dingguo, Beijing, China). A total of 40 μg proteins were fractionated on 12% SDS-PAGE, and transferred to nitrocellulose membranes. After blocking with 5% nonfat milk, the membranes were immunoblotted with the primary antibodies: Smad2 (ab71109, Abcam, Massachusetts), p-Smad2 (sc101801, Santa Cruz, California), Smad3 (BM3559, Boster Biotech, Wuhan, China), p-Smad3 (GD-CZ5616R, Santa Cruz), Smad4 (PB0446, Boster Biotech), and Smad7 (sc-365846, Santa Cruz). β-actin was probed as a loading control. Then membranes were washed and incubated with HRP-conjugated secondary antibody (sc-2004 or sc-2005, Santa Cruz), Western blot analysis was performed using the Odyssey Infrared Imaging System (Li-Cor Lincoln, Nebraska).
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5

Kidney and Cell Protein Analysis

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Protein was extracted from kidney tissues and RAW 264.7 cells. Protein concentrations were determined using the BCA Protein Assay Kit (71285-M, Millipore, Darmstadt, Germany). In 6%, 7.5%, and 12% SDS-PAGE gels, equal amounts of protein (30 μg/lane for RAW 264.7 cells and 60 μg/lane for kidney tissues) were separated. Subsequently, they were transferred onto nitrocellulose membranes. They were then blocked for 2 h in 5% skim milk, and 4 °C incubation was carried out overnight on the membranes with primary antibodies for Kim-1- (1:1000, ABF199, Sigma Aldrich, Darmstadt, Germany), β-actin (1:5000, 3700, Cell Signaling Technology, MA, USA), Hif-1α (1:1000, 36169, Cell Signaling Technology, MA, USA), p65 (1:2000, 6956, Cell Signaling Technology, MA, USA), arginase-1 (1:500, sc-18354, Santa Cruz, CA, USA), fibronectin (1:1000, ab45688, Abcam, Cambridge, UK), collagen 1 (1:1000, ab260043,Abcam, MA, USA), smad7 (1:500, sc-365846, Santa Cruz, CA, USA), and α-tubulin (1:2000, sc-8035, Santa Cruz, CA, USA). Antirabbit or antimouse second antibodies conjugated to horseradish peroxidase were added to the membranes for one hour. Protein bands were visualized by chemiluminescence detection, while the signal intensities were analyzed using Image J software (NIH, Bethesda, MD, USA).
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