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2 protocols using alexa fluor 647 conjugated goat anti rabbit igg secondary antibody

1

Comprehensive Macrophage Phenotyping Protocol

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For the surface marker staining, cells were stained according to the manufacturer's directions. The following antibodies were used: anti-F4/80 (eBioscience), anti-CD80 (eBioscience, Waltham, MA, USA), anti-CD86 (eBioscience), anti-MHCII (eBioscience). To detect LC3II in splenic macrophages, Flowcellect autophagy LC3 antibody-based assay kit (Merk Millipore) was used according to the manufacturer's directions. To assess TLR7, Notch1 expression in macrophages, spleen cells were then stained with anti-F4/80 and resuspended with fixation/permeabilization solution (eBioscience) then stained with anti-TLR7 (IMGENEX, CO, USA), anti-Noch1 (eBioscience), respectively. Similarly, fixed and permeabilized cells were stained with anti-Hes-1 (abcam) or anti-P62 (Merk Millipore), and then stained with Alexa Fluor 647 conjugated goat anti-rabbit IgG secondary antibody (abcam) and Alexa Fluor 488 conjugated goat anti-mouse IgG secondary antibody (abcam), respectively. Annexin V-FITC and PI Apoptosis kit (eBiosciences) was used to examin the mortality of macrophages in vivo and in vitro. All of the flow cytometry data were aquired with the BD FACS Calibur cytometer and analyzed by FlowJo software.
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2

Histological Analysis of Lung Tissue

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As previously described (Raffay et al., 2016 (link)), after terminal anesthesia by ketamine/xylazine overdose, animals were perfused in-situ by right ventricular puncture with PBS (pH 7.4) then 10% formalin, cannulated by tracheostomy and lungs inflation-fixed with 10% formalin at 25 cm H2O. The trachea was ligated and the lungs were post-fixed in 10% formalin at 4° C for >24 hours. Tissue was paraffin embedded and 5 μm lung sections were processed for histology or immunostaining. Hematoxylin/Eosin and Masson’s Trichrome staining were performed by the CWRU Tissue Resource Core. Immunofluorescent tissue visualization for EpCAM and MPO by confocal microscopy was performed essentially as previously described (Johnson et al., 2015 (link), 2018 (link)). Tissue slices on slides were deparaffinized and rehydrated prior to antigen retrieval in boiling citrate. Slides were blocked with serum and incubated overnight. Slides were washed and incubated with AlexaFluor 488-conjugated rat anti-mouse EpCAM (BioLegend) and rabbit anti-mouse MPO (Abcam) antibodies. Slides were then washed and stained with AlexaFluor 647-conjugated goat anti-rabbit IgG secondary antibody (Abcam). Slides were imaged on a Leica SP5 Scanning Confocal Microscope.
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