The largest database of trusted experimental protocols

Item software package

Manufactured by Olympus
Sourced in Germany, Japan

The ITEM software package is a powerful tool designed for image acquisition and analysis. It provides a comprehensive suite of features to capture, process, and analyze digital images from a variety of microscopy and imaging sources. The core function of ITEM is to facilitate the efficient management and examination of visual data, enabling users to extract meaningful insights from their research.

Automatically generated - may contain errors

3 protocols using item software package

1

Electron Microscopy of Tau Filaments

Check if the same lab product or an alternative is used in the 5 most similar protocols
Electron microscopy was performed in the Core Facility for Integrated Microscopy, Faculty of Health and Medical Sciences, University of Copenhagen, Denmark. Carbon-coated copper grids (200 mesh; Ted Pella Inc.) were glow-discharged with a Leica EM ACE 200 (Leica Biosystems Nussloch GmbH), and loaded with 6 µL of sarkosyl-insoluble sample. The sample was adsorbed for 1 min, blotted and stained with 2% phosphotungstic acid in dH20 for 2 min. After blotting and a quick wash with dH20, the samples were examined with a Philips CM 100 TEM (Koninklijke Philips N.V.), operated at an accelerating voltage of 80 kV. Digital images were acquired at a nominal magnification of x180,000, by using an OSIS Veleta digital slow scan 2k × 2k CCD camera and the iTEM software package (Olympus Corporation). Filaments shorter and longer than 200 µm were analysed in at least two fields of view with ImageJ software. Reported values are mean ± SEM of 70 and 32 PHFs for APPswe/PS1ΔE9 and AD tissue, respectively.
+ Open protocol
+ Expand
2

Immunogold Labeling of Extracellular Vesicles

Check if the same lab product or an alternative is used in the 5 most similar protocols
Electron microscopy was performed on EV pellets stored at −80°C. For whole-mount analysis, EV suspensions (5 µL each) were incubated for 1 min on formvar and carbon-coated glow-discharged copper grids and subsequently stained with 2% uranyl acetate. Immunogold labelling was performed as described [2224]. After blocking with 1% BSA in phosphate-buffered saline, grids were incubated with a 1:50 dilution of primary mouse anti-CD63 antibody (Thermo Fisher Scientific; TS63) in PBS containing 0.1% BSA for 1 h at room temperature. Extensive washes in the same buffer were followed by incubation with rabbit-anti-mouse antibody (Jackson ImmunoResearch) for 30 min, and after repeated washes 5-nm Protein A-gold (UMC Utrecht, the Netherlands) was applied for 1 h. After subsequent thorough washing, preparations were fixed using 1% glutaraldehyde in PBS, washed again and finally stained with 2% uranyl acetate. For controls, the primary antibody was omitted, resulting in complete loss of labelling (Supplementary figure S1). Preparations were inspected in an EM912 AB transmission electron microscope (Zeiss) at 120 kV under zero-loss conditions at slight underfocus. Images were recorded using a 2k x 2k slow-scan CCD camera (TRS, Germany) and the iTEM software package (Olympus-SIS).
+ Open protocol
+ Expand
3

Electron Microscopy Analysis of Cellular Organelles

Check if the same lab product or an alternative is used in the 5 most similar protocols
For electron microscopy analysis, SKBR-3 and BT474 cells were seeded on glass chamber slides (Lab-Tek 177,380, Nalge Nunc int., Rochester, NY, USA) and treated for 7d. After drug treatments, cells were processed for electron microscopy [32 (link)] and observed with a CM10 electron microscope (Philips, Eindhoven, The Netherlands). Digital images were taken with a Megaview 3 camera. Analysis of morphologically identified multivesicular bodies (MVBs), autolysosomes (AL), autophagic vesicle/lipid droplets (AV/LDs) and lipid droplets (LDs) diameters were assessed in 10 cells for each treatment. The diameter of each organelle was measured with iTEM software package (Olympus-SYS; Olympus Corporation, Shinjuku, Tokyo, Japan) and plotted as histograms.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!