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4 protocols using cd44 bv421

1

T Cell Surface Marker Staining

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T cells were washed with PBS containing 2% FBS prior to the addition of antibodies. Cells were stained with fluorophore-conjugated antibodies specific for mouse CD3-AF700 (BD Biosciences, San Jose, CA, USA), CD8-APC (eBioscience, Waltham, MA), CD27-PE (BD Biosciences, San Jose, CA, USA), and CD44-BV421 (BD Biosciences, San Jose, CA, USA) in PBS with 2% FBS for 15 min at 4 °C. Cells were then fixed in 4% paraformaldehyde for 10 min at 4 °C and washed twice in PBS with 2% FBS. Flow cytometry was performed on a Canto II flow cytometry system (BD Biosciences, San Jose, CA) 32 (link).
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2

Multicolor Flow Cytometry Analysis

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Antibodies used to detect the indicated mouse proteins were as follows: CD4-PerCP, -A647, -FITC (RM4-5), CD8-biotin, -PerCP, -647 (53-6.7), CD11b-biotin (M1/70), purified CD16/32 (2.4G2), CD19-biotin (1D3), CD25-PerCP, -APC, -PE (3C7), Gr1-biotin (RB6-8C5), and CD44-BV421, -PE, and -APC (IM7); TCRβ-APC, -PE, and -BV421 (H57-597); CD3ε-PerCP, -APC, -PE, and -biotin (2C11), NK1.1-biotin (PK136), purified pTα (2F5), CD3γε-APC (17A2), TCRγδ-biotin (GL3), and pZAP70(Y319)-A674, obtained from BD Biosciences; and F4/80-biotin (BM8), CD98-PE (RL388), CD8-BV421 (53-6.7), and CD71-PE (R71217), all from eBioscience. Annexin V-PE, 7AAD, and the APC-labeled anti-BrdU mAb (3D4) were purchased from BD Biosciences. The APA1/1 mAb, which recognizes a conformational epitope of CD3ε, and its use as a probe for the conformational change of the TCR have been described previously (22 (link)). Where necessary, secondary antibodies (anti-rabbit A647 and anti-mouse A647 from Thermo Fisher) or fluorescent probes (streptavidin-PErCP and -APC from BD Biosciences, streptavidin-PE from Invitrogen, and streptavidin-BV421 from BioLegend) were used.
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Lung Cell Isolation and Flow Cytometry

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An amount of 2 μg of anti-mouse CD45-BV786 antibody (BD Biosciences, Franklin Lakes, NJ, USA) was diluted in sterile PBS and administered intravenously in the tail vein 10 min before anesthesia. CD 45+ is a circulating lymphocyte, and CD45− is a tissue-resident cell. In total, 40 U/mL DNase I and 1 mg/mL Collagenase IV enzyme were measured to a volume of 2 mL and incubated with lung tissue at 37 °C for 30 min. The tissue was then homogenized using a dissociator, filtered through a 70 μM cell strainer, and subjected to RBC lysis to obtain single lung cells. After preparing the lung cells to a concentration of 5 × 106 cell/mL, they were washed with PBS and live-cell staining was performed using fixable viability stain 700 (FVS700) (BD Biosciences, Franklin Lakes, NJ, USA). After treating lung cells with Fc BlockTM reagent, the surface markers CD44-BV421, CD69-BV605, CD103-PE, CD62L-APC, CD4-FITC, CD3-PE-Cy7, and CD8-BB700-per cycle 5.5 ((BD Biosciences, Franklin Lakes, NJ, USA)) were used for staining. The flow cytometry gating strategy was performed according to Supplementary Materials Figure S1, based on a previous study [45 (link)]. FACS Aria Fusion from BD Biosciences was used, and all results were derived using FlowJo software v10.
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Multiparametric Flow Cytometry Analysis

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Antibodies used to detect the following mouse proteins were: CD4-PerCP, -647, -FITC (RM4-5), CD8-biotin, -PerCP, -647 (53-6.7), CD11b-biotin (M1/70), CD16/32 purified (2.4G2), CD19-biotin (1D3), CD25-PerCP, -APC, -PE (3C7), Gr1-biotin (RB6-8C5), CD44-BV421, -PE and -APC (IM7); TCRβ-APC, -PE, and -BV421 (H57-597); CD3e-PerCP, -APC and -PE -biotin (2C11), NK1.1-biotin (PK136), pTα purified (2F5), CD3γε-APC (17A2), anti-mouse pZAP70 -647 (Y319), obtained from BD Pharmingen; F4/80biotin (BM8), CD98-PE (RL388), CD8-BV421 (53-6.7), CD71-PE (R71217), all from eBioscience. Annexin V-PE, 7AAD and the APC-labeled anti-BrdU mAb (3D4) were purchased from BD Pharmingen. The APA1/1 monoclonal antibody, which recognizes a conformational epitope of CD3e, and its use as a probe for the conformational change of the TCR have been described previously (Risueno et al., 2005) (Risueno et al., 2005) .
Where necessary, secondary antibodies (anti-rabbit Alexa647 and anti-mouse Alexa647 from ThermoFisher) or fluorescent probes (Streptavidin-PErcp and -APC from BD Pharmingen, Streptavidin-PE from Invitrogen and Streptavidin -BV421 from Biolegend) were used.
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