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13 protocols using filter paper

1

Urine Marking Quantification in Mice

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Female mice were placed in normal home cages that were bottomless, set on filter paper (Fisher Scientific: 05-714-4) and left in a darkened room for 4 hours. Mice did not have access to water to prevent the water leaks from disturbing urine marks. Paper was imaged using a widefield camera (Logitech C930e) while illuminated by UV light. Images were thresholded and converted to B&W binary in ImageJ (version 2.0.0-rc-49/1.51d), and total number of black pixels was counted. A region of interest corresponding to the middle 50% of the image area was used to count the number of black pixels in the middle of the cage.
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2

Graphene-oxide coated TEM grids for biomolecule imaging

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Copper TEM grids with mesh size 400 were purchased from Agar Scientific, including 3 nm amorphous carbon on a lacey carbon film (AGS187-4) and holey carbon film (AGS174-3). A graphene oxide layer was added to the latter by plasma cleaning for 5 minutes, drop casting of 3 µL graphene oxide suspension (763705-25ML, Sigma-Aldrich), diluted in water to 0.2 mg/mL, blotting with filter paper (11547873, Fisherbrand) after 1 minute, followed by three washing and blotting steps with water. No further treatment was applied to grids before deposition.
The control sample for β-gal was prepared using ammonium acetate solutions used for native ES-IBD and a Cu 200 mesh grid (Q2100CR2, Quantifoil) with 2 µm holes and 2 µm spacing between the holes. Three microliters of a 5 µM solution was applied to the grid, followed by blotting and plunging into liquid ethane, using a Vitrobot (Thermo Fisher Scientific) at a relative humidity of 100% and a temperature of 10°C.
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3

Lipid Extraction Protocol for Plasma and Liver

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Prior to lipid extraction, the liver was homogenized by using an Omni TH homogenizer (Omni International, Warrenton, VA). Lipids were extracted in duplicate from 100 μL aliquot of plasma and 0.05 g of liver according to Folch’s method [20 (link)] under cold conditions (−20 °C) using chloroform/methanol (2:1, v/v) in a 5:1 and 20:1 ratios over the sample volume, respectively. The mixtures were vortexed for 10 s and allowed to stand on ice for 10 min. After being mixed again by vortexing, they were centrifuged at 9,279g for 10 min. For plasma samples, 400 μL of the organic layers were collected, while for the liver samples, all the organic solvents were collected and filtered through filter paper (Fisher Scientific). Then, the extracts were evaporated to dryness under vacuum. Prior to mixed-mode fractionation, the lipid extracts were reconstituted in 10 μL of chloroform for plasma samples while in the case of liver samples, the residue was re-dissolved at a final concentration of 0.10 μg μL−1. The whole procedure was carried out using glass vials to avoid contaminations from containers.
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4

Generational AgNPs Toxicity in Seeds

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One hundred seeds per treatment were germinated on Filter Paper (Fisherbrand Filter Paper; Cat. No: 09-795B; Quantitative P8; 7.0 cm diameter in size) in a Petri Dish (Kimble Kimax 23060-10020 Borosilicate Glass 100 mm × 20 mm) with 2 mL of either ddH2O or 75 μg/L AgNPs (in ddH2O). Seed germination was counted at 10 DAP. Seeds produced by healthy unexposed plants (exposed seed generation 0 or E0) were growing in exposed soil until seed harvest. The seeds from this harvest (E1) were themselves grown on exposed soil until seed harvest to produce the E2 seed generation, and so on for the E3 seed generation. To test reproductive toxicity, germination rates of all 4 generations of seeds (E0–E3) were compared. Each treatment had triplicate germination tests and the entire experiment was repeated three times.
In brief, E0–E3 generations were defined as followed (also see Figure S1):
E0: generation: seeds were harvested from non-exposed plants;
E1: seeds were harvested from the plants germinated from E0 seeds, either irrigated with water or AgNPs;
E2: seeds were harvested from the plants germinated from E1 seeds, either irrigated with water or AgNPs;
E3: seeds were harvested from the plants germinated from E2 seeds. Different letters indicate significantly different.
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5

Multifunctional Surface Coatings

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All substrates were cleaned with acetone and ethanol and dried with nitrogen gas. To one pot solution of 70 wt. % PMMA + SP in acetone, 0 to 50 wt. % of heptadecafluoro−1, 1, 2, 2-tetrahydrodecyl triethoxysilane (FDTES; Gelest) was added. Then, the solution was spray coated on glass and polyester fabric surfaces and dried at ambient conditions. Similarly, one pot solution of PMMA + SP + FDTES was spray coated on different substrates, including acrylic (McMaster), PET (McMaster), aluminum (Fisher), copper (McMaster), tin (McMaster), and filter paper (Fisher) and dried at ambient conditions. Furthermore, one pot solution of 50 wt.% commercially available photochromic pigments (B07123TT3X, Uniglow Pigments) + FDTES and 50 wt. % commercially available thermochromic pigments (B07XB51DL4 and B07D1RNHJF, Atlanta Chemical Engineering) + FDTES were prepared in hexane. Then, the solution was spray coated on polyester fabric and dried at ambient conditions.
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6

Urine Marking Quantification in Mice

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Female mice were placed in normal home cages that were bottomless, set on filter paper (Fisher Scientific: 05-714-4) and left in a darkened room for 4 hours. Mice did not have access to water to prevent the water leaks from disturbing urine marks. Paper was imaged using a widefield camera (Logitech C930e) while illuminated by UV light. Images were thresholded and converted to B&W binary in ImageJ (version 2.0.0-rc-49/1.51d), and total number of black pixels was counted. A region of interest corresponding to the middle 50% of the image area was used to count the number of black pixels in the middle of the cage.
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7

Cellulose-based Filter Paper Synthesis

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Filter paper with a base weight of 103 g/m2 and a diameter of 18.5 cm was purchased from Fisher Scientific International, Inc. (Pittsburgh, UK). The paper was made from cellulose fibres with a degree of polymerization (DP) of approximately 830. Sodium hydroxide, urea and zinc oxide were purchased from Nan Jing chemical reagent Co. LTD. (Nan Jing, China). All of the chemicals were used as received.
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8

Water Absorption Kinetics of Composite Discs

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A similar method to that used by Agha et al [39] was used to conduct this study. All composite discs were firstly conditioned (dried) at 37±1°C in an incubator (Carbolite, Camlab, Cambridge, UK) over 72 h and then weighed separately (time 0, W0) and immersed in 100 ml DW at 37±1°C. At regular pre-determined time intervals over seven weeks the samples were removed from DW, blotted dry on filter paper (Fisherbrand, USA) and weighed (Wt) to an accuracy of 0.0001 g (Mettler HK balance, USA), before returning to the bottle with DW in the oven. Several readings were recorded on the first day and then less frequently over seven weeks. Each sample was weighed in less than 30s to avoid any dehydration of the samples. The weight change (%) at each time point was calculated using Equation 1. Wt was the weight at the time interval (t) and W0 was the initial weight at time zero (time 0).
Weight change (% uptake) = (Wt -W0/W0) x 100 Equation 1The mean weight change was then plotted against time 1/2 (t 1/2 ), with standard deviations for each interval.
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9

Tardigrade Desiccation and Rehydration Assay

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The procedure was performed as described previously [4]. Briefly, tardigrades were dropped onto a nylon filter (Membrane Solutions, Auburn, WA, USA) placed on a filter paper (Thermo Fisher Scientific, Waltham, MA, USA) in a plastic dish with total of 125 μL water, and then immediately transferred in a sealed plastic box adjusted to 50% or 10% RH and desiccated for 2 days at 18 °C. The desiccated tardigrades were subsequently rehydrated with 2 mL of water and recovery rates at 1 h after rehydration were calculated. Animals showing spontaneous movements or responses to touch stimuli were judged as recovered. Tardigrades desiccated at 10% RH were subjected to 97% RH for 1 day before rehydration with water. Aqueous glycerol solution was used for generating 50% and 97% RH (glycerol; Nacalai Tesque, Kyoto, Japan) [6] and activated silica gel was used for 10% RH. The actual RH was checked using a hygrometer (HN‐CHPR; Chino Corp., Tokyo, Japan).
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10

Characterization of Exosomes from Adipose-Derived Stem Cells

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Freshly isolated ADSCs-Exo in PBS were adsorbed at carbon-coated copper grids (MilliporeSigma, Burlington, USA) for 5 min and the excess was blotted on filter paper (Thermo Fisher Scientific, Waltham, USA). Subsequently, these Exo were stained with 3% uranyl acetate for 5 min and the excess was blotted. The size and morphology of Exo were examined by a transmission electron microscope (Hitachi, Tokyo, Japan). In addition, the size distribution of these Exo was determined by a high-sensitivity nano-flow cytometer (NanoFCM, Fujian, China) as described previously [30 (link)]. Moreover, the profiles of exosomal markers, including Flotillin, CD9 and CD81, and that of Calnexin (1:1000; CST, Boston, USA), an endoplasmic reticulum marker, were detected by western blot. The expressions of CD9 and CD81 (at 1:2 dilution using staining buffer) were further analyzed by flow cytometry.
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