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4 protocols using anti tenascin

1

Detecting Caveolae Protein Interactions

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Monoclonal anti-Cav1 (#3267) and anti-Alix (#2171) antibodies were from Cell Signaling Technology. Anti-LBPA was from Echelon (Z-SLBPA). Anti-CD63 (ab1318), antiflotillin (ab13349), antiperiostin (ab14041), anticalreticulin (ab2907), anti-PTRF (ab48824), and anti-Tsg101 (ab83) were from Abcam. Anti-GM130 (610823), anti–py14-Cav1 (611339), anticadherin (610181), and antivimentin (550513) were from BD Transduction. Antitubulin (T-9026), anti-FN (F3648), Anti-Tenascin (Clone Mtn-12, T3413), and anti–smooth muscle actin (A5228) were from Sigma. Anti-Tenascin was also from Millipore (AB19011). Anti-nSMase1 (sc-377135) and anti-nSMase2 (sc-166637) were from Santa Cruz. Alexa Fluor 488-, 546-, and 647-conjugated phalloidin were from Life Technologies. GW4869 (567715) was from Calbiochem, and dmA (A4562) and U18666A (U3633) were from Sigma. Matrigel (354230) was from Becton Dickinson, and Collagen I from rat tail (354249) was from Corning. Filipin was from Sigma (F4767).
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2

Whole-mount Immunostaining and WISH Protocol

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Embryos were fixed in 4% paraformaldehyde (PFA)/PBS overnight at 4°C, rinsed in PBS-T (PBS with 0.05% Tween 20), and exposed to 0.2% Triton X-100/PBS. For whole-mount immunostaining, embryos were incubated in Blocking One solution (Nacalai Tesque), washed with 0.2% Triton X-100/PBS, and stained with the following primary antibodies: anti-Ebf3 (1:1000; R&D Systems, AF5166), anti-Tenascin (1:1000; Millipore, AB19013), anti-MF20 [1:200; Developmental Studies Hybridoma Bank (DSHB)]; Alexa Fluor-conjugated antibodies (1:1000; Thermo Fisher Scientific, A-21203, A-21206) were used as secondary antibodies. For WISH, GFP-marked RNA probes were generated from the cDNA of scxa amplified by reverse transcription PCR (RT-PCR) with the following PCR primers: Scxa forward primer, 5′-ACCGGCTCCGAGCCGATACGTGTA-3′; Scxa reverse primer, 5′-GGTTGCTGAGGCAGAATGTGCAGA-3′.
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3

Immunofluorescence Characterization of Cellular and Extracellular Matrix Components

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Both cellularized (with v-HCFs or a-HCFs) and decellularized samples were fixed in paraformaldehyde 4% in PBS (PFA, Alfa Aesar) for 15 min, washed with PBS, and cells were permeabilized with Triton X-100 (Sigma-Aldrich) 0.5% in PBS for 10 min. Samples were then blocked with bovine serum albumin (BSA, Sigma-Aldrich) 2% in PBS for 30 min, followed by staining with Phalloidin-Rhodamine (ThermoFisher) or primary and secondary antibodies, diluted in BSA 2% in PBS. Primary antibodies for fibroblasts staining were: Anti-Actin Smooth Muscle (α-SMA, Sigma Aldrich) and Anti-Discoidin Domain Receptor 2 (DDR2, ThermoFisher). Primary antibodies used for extracellular matrix protein detection were anti-Collagen I, anti-Collagen III, anti-Fibronectin, anti-Laminin, anti-Tenascin, (all purchased from Sigma-Aldrich), and anti-Collagen IV (Abcam). Secondary antibodies used were anti-mouse Alexa Fluor 555 and anti-rabbit Alexa Fluor 488 (both from ThermoFisher). Nuclei were counterstained with DAPI (Sigma-Aldrich). Samples were maintained in PBS during imaging by using Nikon Ti2-E fluorescence microscope (Nikon Instruments). Immunofluorescence experiments were performed in biological triplicate.
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4

Immunohistochemical Analysis of Tissue Samples

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Formalin-fixed paraffin-embedded sections were deparaffinized and rehydrated by passage through xylene and a graded alcohol series. Endogenous peroxidase activity was inactivated by treatment with 3% hydrogen peroxide, after which antigen retrieval was performed by incubation in citrate buffer in a pressure cooker. Sections were blocked in 5% serum for an hour and then incubated with primary antibody overnight at 4°C. Primary antibodies used were anti-CD31 (Abcam) 1:100, anti-MPO (Dako) 1:1,000, anti-F4/80 (Abcam) 1:100, anti-tenascin (Sigma) 1:2,000, anti-Ki-67 (Vector) 1:200 and anti-cleaved caspase-3 (R&D) 1:800. Sections were incubated in secondary antibody for 30 min (Vectastain ABC system) and staining visualized with 3,3′-diaminobenzidine tetrahydrochloride. Sirius red staining was carried out as described previously.
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