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Protein assay

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The Bio-Rad protein assay is a colorimetric detection and quantitation method for measuring the total protein content in a sample. It utilizes a dye-binding reagent that changes color when bound to proteins, allowing for the determination of protein concentration through spectrophotometric analysis.

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2 654 protocols using protein assay

1

Protein Extraction and Quantification

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Cells were washed with DPBS without calcium or magnesium and lysed for 15–20 mins at 4°C by the addition of 350 μl of T-PER lysis buffer containing a protease inhibitor cocktail. The lysate was transferred to clean microcentrifuge tubes and stored at -80°C for subsequent analysis. Total protein was quantified using the Bio-Rad protein assay using bovine gamma globulin (IgG) as a standard. The lysis buffer was tested for possible interference with protein quantification and ELISA assays through the generation of standard curves with varying concentrations of T-PER lysis buffer. The concentration 0.1X T-PER was determined to be compatible with the Bio-Rad protein assay.
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2

Extraction and Quantification of Onion Alliinase

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Total protein was extracted from 500 mg of onion bulb tissue, which had been frozen at −80 °C, with 500 mL of PBS buffer and quantified using a protein assay (Bio-Rad) with bovine gammaglobulin (SIGM) as the standard. Alliinase, as the positive control, was purified from fresh garlic cloves. The purified alliinase was also quantified using a protein assay (Bio-Rad) with bovine gammaglobulin (SIGM) as the standard. Nine μg of the extracted total protein and 175 ng of the purified alliinase in Laemmli Sample Buffer (Bio-Rad) were loaded onto a 10% polyacrylamide gel and electrophoresed. The protein was stained by Coomassie Brilliant Blue (CBB) or electrically blotted onto a polyvinylidene difluoride membrane (Bio-Rad) using a Trans-Blot SD Cell (Bio-Rad) following the manufacturer’s instructions. The blot was blocked by 5% skim milk solution and incubated overnight with an alliinase polyclonal antibody raised in a rat. Excess antibody was removed by two 30 min washes in Tween-PBS buffer, and the membrane was incubated for 1 h with an anti-rat IgG solution. Again, excess antibody was removed by three 30 min washes in Tween-PBS buffer, and the alliinase protein was detected using the HRP Conjugate Substrate Kit (Bio-Rad) according to the manufacturer’s instructions. The membranes were imaged on a ChemiDoc XRS (Bio-Rad).
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3

Protein Concentration Determination

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The protein concentration of the solutions was determined by the Bio-Rad Protein Assay using bovine serum albumin as a standard (Bio-Rad, CA, USA). The Bio-Rad Protein Assay is a dye-binding assay in which a differential color change of a dye occurs in response to various concentrations of protein.
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4

Protein Concentration Determination

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The protein concentration of the solutions was determined by the Bio-Rad Protein Assay using bovine serum albumin as a standard (Bio-Rad, CA, USA). The Bio-Rad Protein Assay is a dye-binding assay in which a differential color change of a dye occurs in response to various concentrations of protein [62 (link)].
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5

Autophagy-Modulated Protein Expression

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Wild-type and autophagy-deficient PC3, LNCaP, and MCF7 cells treated with or without pantoprazole under aerobic or hypoxic conditions for 24 hours were lysed in RIPA buffer and centrifuged at 13,000g at 4°C for 30 minutes to collect the supernatant. Protein concentration was determined using a Bio-Rad Protein Assay (Bio-Rad Laboratories, Hercules, CA). A total of 20 μg of protein were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred to a polyvinylidene fluoride membrane (Millipore, Etobicoke, ON, Canada). The membrane was washed in Tris-buffered saline and Tween 20 and blocked with 5% skim-milk + 2% FBS in Tris-buffered saline and Tween 20. Membranes were incubated with primary antibodies overnight at 4°C followed by appropriate horseradish peroxidase–conjugated secondary antibodies. Protein concentration in the supernatant was determined using a Bio-Rad Protein Assay (Bio-Rad Laboratories, Hercules, CA) to quantify LC3-II and p62. Protein levels were quantified using Image Pro software (Version premier 9).
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6

Protein Extraction from Murine Tissues

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Brain, spinal cords, and muscles were excised from adult mice. If not used immediately, they were flash frozen in liquid nitrogen and stored at −80°C until used. Lysis buffer consisting of PBS with 1% Triton X-100 and protease inhibitors (Roche) was then added, and tissues were cut, and then crushed with a manual homogenizer. After 30 min of incubation on ice, samples were centrifuged at 17,000 × g and supernatant was transferred to a clean tube. Protein concentration was determined using a Bio-Rad Protein assay. Cultured cells were collected into lysis buffer with protease inhibitors (Roche). NP40 lysis buffer consisted of PBS with 1% NP40, 50 mM Tris-HCl pH = 7.5 and 150 mM NaCl. RIPA lysis buffer consisted of PBS with 50 mM Tris-HCl pH = 7.5, 150 mM NaCl, 0.5% SDS, 0.5% deoxycholic salt, and 1% NP40. Samples were mixed well and incubated on ice for 30 min, then centrifuged at 17,000 × g for 15 min and the supernatant was transferred to a clean tube. Protein concentration was determined using Bio-Rad Protein assay (Bio-Rad Laboratories) according to the manufacturer's instructions.
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7

Protein Purification and Quantification

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To reduce the salt contamination and to enrich the proteins, methanol-chloroform-precipitation according to Wessel and Flugge67 (link) was performed. The pellet was dried and dissolved in lysis buffer. Total protein concentration was determined using the Bio-Rad protein assay (Bio-Rad, Hercules, CA, USA) according to Bradford68 (link). BSA (Sigma, Steinheim, Germany) was used as a standard. Total protein concentration was determined using the Bio-Rad protein assay (Bio-Rad, Hercules, CA, USA) according to Bradford68 (link). BSA (Sigma, Steinheim, Germany) was used as a standard.
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8

Bradford Protein Quantification Assay

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The Bradford colorimetric assay was used for protein quantification (19 (link)) using the Bio-Rad Protein Assay with bovine serum albumin as standard.
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9

Immunoblotting Assay for Whole Cell Lysates

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Immunoblotting assays for whole cell lysates of cells and tissues were performed as previously described (Tarrago et al., 2018 (link)). Tissues or cells were homogenized and lysed in NETN buffer (20 mM Tris-HCl (pH 8.0), 100 mM NaCl, 1 mM EDTA and 0.5% Nonidet P-40) supplemented with 50 mM β-glycerophosphate, 5 mM NaF and a protease inhibitor cocktail (Roche). After 30 min of incubation at 4°C, the samples were centrifuged at 12,000 r.p.m. for 10 min at 4°C. Protein concentrations in the supernatants were determined by Bio-Rad protein assay. Lysates were separated by SDS–PAGE, and electrophoretically transferred to polyvinylidene difluoride (PVDF) membranes (Immobilon-P; Millipore). Enhanced chemiluminescence detection was performed using Super-Signal West Pico or Femto Chemiluminescence Substrate (Thermo Scientific). Films were scanned and densitometry was performed using ImageJ. The following antibodies and their dilutions were used for immunoblotting: mouse CD38 (R&D Systems; AF4947, 1:1,000), CD45 (Abcam; AB40763; 1:1000), Phospholamban (PLN) (Invitrogen; MA3-922; 1:1000), CYP3a4 (Proteintech, 18227-1-AP; 1:1000), actin (Cell Signaling Technology; 8457, 1:5,000) and GAPDH (Cell Signaling Technology; 97166, 1:5,000).
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10

Quantifying ARRB2 and GRK6 in Rat Striatum

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On PD 17 (N = 31), PD 39 (N = 33), or PD 84 (N = 33), male rats were injected with vehicle or EEDQ (2.5 or 7.5 mg/kg). After 24 h, rats (n = 10–12 per group) were killed by rapid decapitation and dorsal striatal sections were dissected and stored as described above. Frozen striatal sections were sonicated in 20 nM Tris buffer containing 1% NP40 and a protease inhibitor cocktail. After sonication, samples were centrifuged at 10,000 × g for 15 min at 4 °C. Protein concentrations for the final pellet were determined using the Bio-Rad Protein Assay with BSA as the standard. ARRB2 and GRK6 levels were assessed using commercially available enzyme-linked immunosorbent assay (ELISA) kits (CBS-EL002135RA and CBS-EL009927RA) according to the manufacturer’s instructions (Cusabio Biotech, Houston, TX, USA). Optical density values were made (absorbance readings at 450 nm, with a wavelength correction reading at 540 nm) using a micro plate reader (Multiskan Sky, Thermo Scientific, Waltham, MA, USA).
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