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1 288 protocols using ab205718

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Western blot analysis of IGF1R pathway

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After extracting total proteins with RIPA Lysis Buffer (Beyotime), the same amount of protein was separated by 10% SDS-PAGE gel and then transferred onto PVDF membranes (Invitrogen). The membrane was incubated with anti-IGF1R (1:1,000, ab263907, Abcam), anti-p-AKT (1:25,000, ab81283, Abcam), anti-AKT (1:500, ab8805, Abcam), anti-cyclin D1 (1:200, ab16663, Abcam), anti-GLUT1 (1:2,500, ab14683, Abcam), anti-YTHDC2 (1:1,000, ab220160, Abcam), or anti-β-actin (1:5,000, ab8226, Abcam) followed by hatching with Goat anti-Rabbit (1:50,000, ab205718, Abcam) or Goat-anti-Mouse (1:5,000, ab205719, Abcam). Protein signals were visualized with the BeyoECL Plus Kit (Beyotime).
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Magna RIP Immunoprecipitation of AGO2-bound miRNAs

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Magna RIP RNA-Binding Protein Immunoprecipitation Kit (Millipore, Burlington, MA) for RIP assay. Cells were cultured with NP-40 RIP lysate buffer containing DTT (1 mM), PMSF (1 mM), RNase inhibitor (200 U/mL) and 1% protease inhibitor. RIP buffer with magnetic beads conjugated with AGO2 antibody (0.5 mg/mL, ab186733, 1:30, Abcam) to the whole cell lysate (200 µL), with IgG antibody (2 mg/mL, ab205718, 1:50, Abcam) serving as the NC. The beads were rinsed with pre-cooled NT2 buffer and incubated with protease K (10 mg/mL) for 30 min to prevent non-specific binding. The immunoprecipitated RNA was purified and the levels of miR-181a-5p and Pcyox1l mRNA were detected by RT-qPCR. The cell experiments were independently repeated three times.
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Protein Analysis of TFF Samples

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The protein composition of TFF samples and chromatographic fractions was analyzed by SDS-PAGE using NuPAGE 4%–12% Bis-Tris Protein Gels (Invitrogen), which were stained with SimplyBlue SafeStain Coomassie Brilliant Blue solution (Invitrogen). Selected gels were further stained with ProteoSilver Silver Stain Kit (Sigma-Aldrich). Western blots were performed using iBLOT 2 Dry Blotting System (Invitrogen) and iBlot 2 Transfer Stacks, polyvinylidene fluoride (PVDF) (Invitrogen). Membranes were blocked in SuperBlock T20 (PBS) Blocking Buffer (Invitrogen). Primary antibody was Rabbit polyclonal to HIV p24 (Abcam, ab63913, 1/2,500) and secondary antibody was Goat Anti-Rabbit immunoglobulin G (IgG) H&L (horseradish peroxidase [HRP]) (Abcam, ab205718, 1/20,000). Membranes were developed using SuperSignal West Pico Chemiluminescent Substrate (Thermo Scientific). Stained gels and membranes were documented using Amersham Imager 600 (GE Healthcare). DC protein assay (Bio-Rad) and HEK293 HCP ELISA kit (Cygnus) were used for protein quantification, according to the manufacturers’ instructions. HC DNA was quantified using Femto Human DNA Quantification Kit (Zymo Research), according to the manufacturer’s instructions.
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Western Blot Protein Detection

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Proteins from samples were isolated using RIPA buffer (Vazyme, Nanjing, China) and were segregated by sodium dodecyl sulfate polyacrylamide gel electrophoresis, and then proteins were transferred onto the polyvinylidene difluoride membranes (Vazyme). The membranes were blocked with 5% skimmed milk (Vazyme). Thereafter, the membranes were incubated with the primary antibodies: anti-Irak2 (1:2000, ab62419, Abcam, Cambridge, UK) or glyceraldehyde 3-phosphate dehydrogenase (1:2500, ab9485, Abcam) overnight. After being rewashed, the membranes were incubated with the secondary antibody (1:3000, ab205718, Abcam) for 2 h. The membranes were analyzed by the ChemiDoc™ MP Imaging System (Bio-Rad) after being treated with ECL kit (Vazyme).
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Protein Expression Analysis by Western Blot

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Protein levels were detected by western blotting referring to the protocols in a previous report [20 (link)]. In brief, HaCaT cells were lysed in radio-immunoprecipitation assay buffer (Beyotime, Shanghai, China), and extracted protein was quantified by bicinchoninic acid assay kit (Thermo Fisher Scientific). Protein samples (20 μg) were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis, and transfer of polyvinylidene fluoride membranes (Thermo Fisher Scientific). After incubating in 5% fat-free milk, the membranes were incubated with primary antibodies for IGF2BP2 (ab129071, 1:3000 dilution, Abcam, Cambridge, UK), HPSE (ab254254, 1:3000 dilution, Abcam), or β-actin (ab8227, 1:3000 dilution, Abcam) overnight, and then incubated with horseradish peroxidase-conjugated IgG (ab205718, 1:8000 dilution, Abcam) for 2 h, followed by exposure to enhanced chemiluminescence kit (Beyotime). The visualized blots were analyzed via Image J software (NIH, Bethesda, MD, USA), with β-actin as a reference.
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In Vitro Ubiquitination of Cyclin B1

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50 nM APC/C, 50 nM Cdc20, 200 nM Cyclin B1, 30 nM UBA1, 20 µM Ubiquitin, 5 mM ATP, 0.25 mg/mL BSA and 250 nM UbcH10 were mixed in a 15 µL reaction volume with reaction buffer: 40 mM HEPES pH 8.0, 0.6 mM DTT, 10 mM MgCl2. 270 nM of each MCC construct was added into its respective reaction. The reaction mixture was incubated at 25 °C for 15 minutes. Samples were taken at 0 and 15 min, and the reaction was terminated with SDS/PAGE loading dye. The reaction mixture was run on a 4–12% NuPAGE Bis-Tris gel and transferred to a nitrocellulose membrane for Western blotting. Blocking was carried out in 5% BSA-TBST and washed in 1× TBST. Ubiquitin-modified Cyclin B1 was detected using an anti-CyclinB1 mAb (ABclonal, A19037) at a 1:2,000 dilution, and HRP-conjugated goat anti-rabbit secondary antibody (Abcam, ab205718) at a 1:10,000 dilution. The membrane was incubated with ECL, detected using the ImageQuant 800 (Amersham), and quantified using ImageJ.
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7

Protein Expression Analysis in Stem Cells

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Proteins were extracted with RIPA buffer, uploaded on 10% SDS-PAGE gel, and transferred to PVDF membrane. Membrane was blocked with 5% non-fat milk for 2 h, and then incubated with antibodies (Abcam, Cambridge, CA, USA), including anti-SLC1A5 (1:1,000, ab237704), anti-Bcl-2 (1:1,000, ab32124), anti-Bax (1:1,000, ab32503), anti-YY1 (1:1,000, ab109228), anti-Nanog (1:200, ab21624), anti-Sox2 (1:1,000, ab97959), anti-GAPDH (1:2,500, ab9485), and secondary antibody (1:50,000, ab205718). ECL reagent (Beyotime) was then used for visualizing protein bands, and gray value was analyzed by Image J software.
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8

WASP Expression in Peripheral Blood Monocytes

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Flow cytometry was used to detect the expression of WASP in peripheral blood monocytes. Using human lymphocyte separation medium (Solarbio, Beijing, China) density gradient centrifugation, PBMCs were isolated from the peripheral blood of the patient and his parents. Using IntraPrep Permeabilization Reagent (Beckman Coulter, A07803), cells were fixed for 15 minutes and permeabilized for 15 minutes, respectively. Next, add the 1 : 100 dilution of rabbit anti-WASP (Abcam, ab75830, UK) to the samples and incubate for 30 min at room temperature. Finally, add 1 : 2000 diluted goat anti-rabbit IgG H&L (fluorescein isothiocyanate; Abcam, ab205718) and incubate for 25 min in the dark. After the cells were centrifuged and resuspended, we used the NAVIOS Flow Cytometer (Beckman Coulter) to detect the expression of WASP, and the data were analyzed by NAVIOS software.
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9

Immunohistochemical Analysis of NaV1.8 in Cardiac Tissues

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Cardiac GPs, atria and ventricles were fixed with 10% formalin and embedded in paraffin. Then, 5-μm-thick tissues were serially cut from paraffin blocks and mounted onto glass slides coated with 1% (W/V) gelatin solution. After antigen retrieval, the tissue sections were incubated with primary antibodies against NaV1.8 α subunit (1:20, ab114110, Abcam, Cambridge, UK) at 4°C overnight. After washing three times with PBS, the sections were then incubated with the secondary antibody (HRP labeled goat anti rabbit, 1:200, ab205718, Abcam, Cambridge, UK) expression were detected using DAB (brown) staining.
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10

Protein Expression Analysis in H9c2 Cells

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Proteins in H9c2 cells were extracted by lysis buffer (P0013J, Beyotime). After determining the concentration with a BCA detection kit (P0012, Beyotime), the proteins were loaded and electrophoresed on 10% SDS polyacrylamide gel (P0012AC, Beyotime), and then transferred onto PVDF membranes (FFP26, Beyotime,). After using 5% non-fat milk to block membranes for 60 min at 37°C, the following primary antibodies were incubated with membranes overnight at 4°C: Bcl-2 (ab59348, 1:1000, 26 kDa, Abcam, USA), Bax (ab32503, 1:1000, 21 kDa, Abcam), Cleaved caspase-3 (ab49822, 1:500, 17 kDa, Abcam), iNOS (ab3523, 1:200, 135 kDa, Abcam), Cox-2 (ab15191, 1:250, 69 kDa, Abcam), CDK4 (ab199728, 1:2000, 34 kDa, Abcam), Cyclin D1 (ab16663, 1:25, 36 kDa, Abcam), HSP70 (ab181606, 1:1000, 70 kDa, Abcam), and GAPDH (ab181602, 1:10000, 36 kDa, Abcam). Following extensive washing, protein bands were incubated with the secondary antibody: Goat Anti-Rabbit IgG H&L (HRP) (ab205718, 1:2000, 42 kDa, Abcam) at 37°C for 2 h. The detection of signal was performed according to a standard ECL method (27), and analysis software (Image J 1.5i, National Institutes of Health, USA) was used for images to measured protein expression. GAPDH was used as housekeeping gene.
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