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22 protocols using ly6c pe cy7

1

Isolation and Characterization of Mouse Leukocytes

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Mouse leukocytes were isolated from the BM as previously described (16 (link)). Briefly, legs were excised from mice after either sham, ischaemia only or IR injury surgeries. BM was collected from femurs and tibias into expansion media (DMEM, high glucose supplemented with 8.9% FBS, 1% MEM-D-valine, 0.1% sodium bicarbonate, 1% penicillin/streptomycin, 1% MEM non-essential amino acids, 1% MEM vitamin mix, 10 U/ml interferon-γ pH 7.4). Erythrocytes were lysed using ACK, the suspension washed twice with expansion media and resuspended into PBS containing 0.1% BSA. Cells were then incubated for 1 h at 4°C with primary antibodies towards IL-36R, IL-36α/β and appropriate IgG controls. Cells were washed with PBS containing 0.1% BSA before incubating with AF647-labelled donkey anti-goat. Leukocyte sub-types were identified using fluorescently labelled antibodies towards neutrophils (PE anti-mouse Ly-6G/GR-1; Biolegend) and monocyte/macrophages (PE-Cy7 Ly6C; Biolegend). Antibodies identifying leukocyte populations were split into separate samples to avoid spectral overlap and then fixed with 2% formyl saline. 50,000 events were collected on a Beckmann Coulter CyanADP with compensation performed on the Summit 4.4.00 software. Data was analysed using FlowJo v10.7.2.
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2

Aptamer Binding on Hematopoietic Cells

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To identify binding capability of each aptamer on the K562 and Molm14 cell lines, cells were resuspended in 2% FBS and stained with DAPI at a 1:10,000 dilution before they were applied for flow cytometry analysis. To assess aptamer binding on PBMCs, cells were first incubated with fluorescently labeled antibodies, and then stained with DAPI before flow cytometry analysis on an LSRII Flow Cytometer or a BD FACS Fortessa (Bronte et al., 2016 (link)). Antibodies used for flow cytometry analysis included FITC-CD45 (BD Biosciences, United States), APC-Cy7- CD45 (BD Biosciences, United States), PE-CD11b (Tonbo, United States), AF700-Ly6G (Biolegend, United States), FITC-Ly6G (Biolegend, United States), PE-Cy7-Ly6C (Biolegend, United States). Results were analyzed using the Flowjo software.
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3

Murine Cytokine-Induced Immune Response

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Murine IL‐6 cytokine was purchased from R&D Systems. Murine GM‐CSF cytokine GM‐CSF was purchased from Abcam. Anti‐Ly6G (1A8) was purchased from eBioscience. STAT3 inhibitor was purchased from BioVision. Ethanol was from Sigma–Aldrich. Anti‐phosphorylated STAT3 (p‐STAT3) was purchased from CST. APC‐CD11b, FITC‐Ly6G, and PE‐Cy7‐Ly6C antibodies were purchased from BioLegend. APC‐CD3, FITC‐CD4, and APC‐Cy7‐CD8 antibodies were purchased from BD Biosciences. Berberine hydrochloride was purchased from Sigma–Aldrich. Lieber‐DeCarli liquid diet was purchased from Bio‐Serv.
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4

Murine Inflammatory Marker Antibodies

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Rabbit monoclonal antibodies to murine IL-1β (clone D3H1Z), neutrophil elastase (clone E8U3X), PTP-PEST (clone D4W7W), and rabbit polyclonal antibody to SHIP1 (D1163) were from Cell Signaling Technology, rabbit polyclonal antibody to GAPDH (#G9545) from Sigma-Aldrich. The monoclonal antibodies to phosphotyrosine (clone 4G10) and PSTPIP2 (clones PSTPIP2-01 and PSTPIP2-03 (14 (link))) were produced in-house with the use of respective hybridomas. Flow cytometry antibodies Ly6G-FITC (catalog # 127606, also used for Western blot), Ly6C-PE-Cy7 (# 128018), CD11b-PE (# 101208) were from Biolegend and CD62L-APC (# 177-0621-81) was from eBioscience (ThermoFisher).
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5

Isolation and Culture of Osteoclast Precursors

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Single-cell suspensions of mouse BMCs were treated with Fc-block, and incubated with FITC-conjugated antibodies against CD3, B220, and Ter119, plus CD11b-APC and Ly6C-PE-Cy7 (all antibodies from BioLegend, San Diego, CA). After exclusion of CD3/B220/Ter119+ cells, osteoclast precursors were sorted based on the intensity of CD11b and Ly6C as in (32 (link)). To compare response of osteoclast precursors to different cytokine combinations, FACS-sorted precursors were plated in triplicate at either 2.5 or 5 × 103/well in 96-well plates and cultured as above.
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6

Comprehensive Flow Cytometric Analysis of Murine Lung Cells

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In brief, lungs were isolated from mice and cut into small pieces. The fragments were digested in DMEM (Thermo Fisher Scientific) supplemented with 10% fetal bovine serum (FBS), 100 U/ml penicillin, 100 μg/ml streptomycin, 0.1% collagenase A (Roche)/0.1% dispase (Roche), and 10 U/ml DNase I (Roche) at 37°C for 60 min. The lung fragments were filtrated through a 70‐µm Cell Strainer (Greiner Bio‐One) into phosphate‐buffered saline, containing 5 mM ethylenediaminetetraacetic acid and 0.5% FBS. The single cell suspensions were divided into 1 × 106 cells each per analysis and underwent a flow cytometric analysis with a FACS Versa (BD Biosciences‐Pharmingen). For the staining, fluorescence‐conjugated monoclonal antibodies against the following targets were used at a concentration of 0.25 µg/106 cells in 100 µl volume: CD45 APC/Cy7 or PerCP/Cy5.5, CD11b PECy7 or PerCP/Cy5.5, CD11c PECy7, Gr‐1 PECy7 or APC, CD34 PECy7, CD40 PECy7, CD64 PECy7, CD80 PECy7, CD86 PECy7, IA/IE PECy7, F4/80 PECy7 or APC, CXCR4 biotin, Sca‐1 PECy7, Ly6C PECy7, Ly6G PECy7, MerTK PECy7, all from BioLegend, as were 7‐AAD Viability Staining Solution and PECy7‐conjugated Streptavidin. Each analysis of flow cytometry was performed through three experiments with a total of six mice per group.
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7

Immunophenotyping Murine Immune Cells

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Mice were euthanised with CO2, and blood was collected by cardiac puncture into EDTA-containing tubes (100 mmol/l EDTA). After lysing erythrocytes with RBC lysis buffer (eBiosciences, San Diego, USA) and washing with PBS, antibodies and viability dye were incubated with white blood cells in FACS buffer (PBS with 0.5% BSA and 2 mmol/l EDTA) for 20 min at 4°C. The following antibodies were used (Biolegend, San Diego, USA): CD45-FITC (30-F11 clone), Ly6G-Brilliant Violet 510 (1A8 clone), Ly6C-PE-Cy7 (HK1.4 clone), CD11b-APC (M1/70 clone), F4/80-PE (BM8 clone), CCR2-Brilliant Violet 421 (SA203G11 clone) and CD14-PE-Dazzle 594 (Sa14-2 clone). Viability dye (Fixable Viability Dye eFluor 780, eBiosciences) was added to distinguish live cells. Cells were washed in FACS buffer and fixed for 20 min at 4°C (Perm/Fix buffer, BD Biosciences, USA) before analysis on a Novocyte cytometer (Acea, USA).
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8

Flow Cytometry Analysis of Immune Cells

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Ketamine (10 mg/kg/mouse) or saline solution for control mice was administered via intra-peritoneal injection [33] (link). After 72 h, animals were euthanized and peripheral blood, bone marrow, spleens, and brains were collected.
Mouse peripheral blood was obtained by cardiac puncture while spleen cells and CNS leucocytes were isolated as previously described [34] (link). Red blood cells were lysed with ACK lysing buffer (Gibco Cat # A1049201); cells were then stained with appropriate antibody cocktails against Alexa Fluor 647-CD11b (BioLegend Cat # 101220, RRID: AB_493546), Ly-6G-APC/Cy7 (Biolegend Cat # 127623, RRID: AB_10645331) and Ly-6C-PE/Cy7 (BioLegend Cat # 128017, RRID: AB_1732093) for 30 min at room temperature and analysed by flow cytometry. Cells were acquired in a FACS Canto II (Becton Dickinson). All analysis was carried out with FlowJo software (Tree Star).
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9

Murine Lung Infection with B. cenocepacia

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C57BL/6 mice were i.t. infected with 5×106 CFU of B. cenocepacia. Animals were euthanized 24 or 48 hpi, and bronchoalveolar lavage (BAL) was collected with 1mL of PBS plus 10−3 M of EDTA. Lung tissue was collected and treated with collagenase IV plus DNase I for 30 minutes at 37 °C, then mashed, washed and stained with anti CD45 brilliant violet 510 (Biolegend, San Diego CA), CD11b Alexa Fluor 700 (Biolegend, San Diego CA), Ly6G PerCP-Cy5.5 (Biolegend, San Diego CA) and Ly6C PE-Cy7 (Biolegend, San Diego CA) antibodies plus live/dead blue discriminator (Invitrogen, Eugene OR). Cells were acquired with a LSR II flow cytometer (BD, Franklin Lakes, NJ). Some lungs were fixed and embedded in paraffin, slides were stained with Hematoxylin-Eosin (H&E).
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10

Isolation of Intestinal Lamina Propria Cells

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Isolation of Intestinal lamina propria cells was performed by following a method established previously58 (link) with slight modifications. Small intestines were washed with three times with HBSS (Ca/Mg-free), and fat and Peyer's patches were removed. Small intestines were then opened longitudinally, cut into 1-cm pieces, and incubated in HBSS containing 5 uM EDTA+5%FBS+1μM DTT. Tissue was then digested 0.14 Wünsch U ml−1 Liberase (Sigma) for 30 mins at 37 °C on a rotor. The digested cell suspension was then passed through 100 μm cell strainers. Isolated intestinal cells were stained with CD45 Percpcy5.5 (0.35 μl per 100 μl; #45–0451–82, eBioscience, San Diego, CA) CX3CR1 PE-TexasRed (1.5 μl per 100 μl; #149013, Biolegend, San Diego, CA) F4/80 AF647 (8 μl per 100 μl; #MCA497A647, Bio-Rad, Hercules, CA), CD11b eflour605 (2 μl per 100 μl; #83–0112–42, eBioscience) Ly6C PE/cy7 (1 μl per 100 μl; #128018, Biolegend) Ly6G APC/cy7 (0.3 μl per 100 μl; #127624, Biolegend) and were subjected to flowcytometric sorting to purify intestinal macrophages using FACS Aria machine (BD).
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