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10 protocols using mouse il 7

1

Investigating Cytokine-Mediated Signaling

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Recombinant human IL-2 (200–02) and mouse IL-7 (217–17) were from Peprotech. IAA (I2515), CoCl2 (232696), sodium citrate (PHR1416), and UK5099 (PZ0160) were from Sigma-Aldrich. PX-478 2HCl (px478, S7612) was from Selleck.
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2

Intestinal Organoid-Intraepithelial Lymphocyte Coculture

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We followed a modified protocol from a previous report (27 (link)). Briefly, intestinal organoids were cultured for 2 days prior to the co-culture with IELs. On the first day of co-culture, SI-IELs collected from the WT mice aged 9-weeks old or 89 weeks old were stained with anti-mouse CD3e-APC-Cy7, anti-mouse CD4-PE-Cy7, and the CD3+ (CD3+) and CD4+ (CD3+ CD4+) -IELs were sorted using FACSMelody (BD Bioscience). Cultured organoids released from Matrigel were washed and counted. We combined 200 organoids and 2.0 × 105 IELs and centrifuged the samples for 3 min at 200 g. In the control group, the same number of organoids as the co-culture group was centrifuged. The pellet was suspended in 20 μL of Matrigel and placed in 24-well plates. After Matrigel polymerization, 500 μL of the complete medium with 100 U/mL recombinant human IL-2 (Roche), 10 ng/mL mouse IL-7 (Peprotech) and 10 ng/mL mouse IL-15 (Peprotech) were supplemented. The medium was refreshed every 1–2 days. Images of organoids were taken with a BZ-X710 microscope (Keyence).
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3

Reconstitution and Preparation of Immunotherapeutic Agents

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ALT-803 was generously provided by Altor BioScience Corporation and was diluted in sterile PBS for in vitro and in vivo studies. Recombinant human IL-15 (Novoprotein), human IL-2, human IL-21, mouse IL-7 (Peprotech), human IL-27 (eBioscience), and Concanavalin A (Type VI, Sigma-Aldrich) were reconstituted in sterile PBS and stored at −20°C. Trametinib (GSK-1120212) was purchased from LC Laboratories and suspended in vehicle solution of 10% PEG-300 (Sigma Aldrich) and 10% Cremophor EL (EMD Millipore) in sterile dH20 for in vivo oral gavage experiments. For in vitro assays, all inhibitors were dissolved in sterile DMSO and diluted in the assays 1:1000, so that the final concentration of DMSO was 0.1%.
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4

Cytokine Production by Cultured ILC2s

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Fresh lung ILC2s (CD45+LinCD127+CD90.2+ST2+) sorted from IL33-treated mice were cultured in 96-well round-bottom plates at a density of 5 × 103 cells per well in RPMI-1640 medium containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin in the presence of 10 ng/ml human IL-2 (PeproTech), 20 ng/ml mouse IL-7 (PeproTech, 217-17-100), 1 ng/ml mouse IL-33 (BioLegend, 580506), 20 ng/ml human IL-7 (R&D Systems, 207-IL-010) and 50 ng/ml human IL-33 (R&D Systems, 3625-IL-010) with or without α-MSH (10 ng/ml) or β-endorphin (MCE, HY-P1502, 10 ng/ml). Then, the levels of cytokines in the culture supernatants were measured by ELISA (mouse IL-5 ELISA kit, Invitrogen, 88-7054-76; mouse IL-13 ELISA kit, Invitrogen, 88-7137-76; human IL-5 ELISA kit, Invitrogen, 88-7056-88; and human IL-13 ELISA kit, Invitrogen, 88-7439-88). For intracellular cytokine staining, 50 ng/ml PMA, 1 µg/ml ionomycin, and 1 µg/ml BFA were added to the cultures 2–4 h before staining.
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5

NK Cell Differentiation from Hematopoietic Progenitors

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NK cell differentiation from HPCs was performed as previously described. In brief, to isolate HPCs, Lin (B cell (B220), T/NK cells (CD2), granulocytes (Gr-1), monocytes (CD11b), NK/NKT cells (NK1.1), and erythrocytes (TER-119)) cells were purified using the MACS Cell Seperation kit (Miltenyi Biotec). c-Kit+ cells from the Lin cells were positively selected using the CD117 (c-Kit) microbeads (Miltenyi Biotec). The purified HPCs were plated into a 24-well plate (BD) at 1 × 106 cells/well and cultured for 7 d in complete RPMI1640 medium supplemented with a mixture of mouse Flt3L (50 ng/ml, Peprotech), mouse SCF (30 ng/ml, Peprotech), mouse IL-7 (0.5 ng/ml, Peprotech), Indometacin (2 ug/ml, Sigma), and gentamycin (20 ug/ml, Sigma). The cell were refreshed with the same media on day 3. To generate the mNK cells, 7 d-HPCs were maintained with IL-15 (30 ng/ml, Peprotech) for 6~7 days.
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6

LCMV-Specific Tfh and Th1 Cell Isolation

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Lentivirus was produced by co-transfecting HEK293T cells with the lentiviral metabolic library plasmids, psPAX2 (Addgene plasmid # 12260) and pCAG4-Eco. At 48 h after transfection, virus was harvested and frozen at −80 °C. Naïve Cas9-expressing SMARTA cells were isolated from 6 Cas9-SMARTA mice and transduced at a MOI of 0.3 to achieve ~20% transduction efficiency. After viral transduction, cells were cultured with human IL-2 (140 IU/ml; PeproTech) for 3 days, then transferred to medium containing 2 ng/ml mouse IL-7 (PeproTech) for 1 day. Transduced cells expressing Ametrine were sorted using a Reflection sorter (i-Cyt), and an aliquot of 5 × 106 transduced SMARTA cells was saved as “input” (~500× cell coverage per sgRNA). Transduced SMARTA cells (1 × 106 cells per recipient) were i.v. transferred into recipient mice followed by LCMV infection 24 h later. Forty-five recipients were randomly divided into 3 groups as biological replicates in each sub-library screening. At 7 days after infection, donor-derived Tfh (CXCR5+SLAM) and Th1 (CXCR5SLAM+) cells were sorted using a Reflection sorter. On average, 5 × 106 SMARTA cells per sample (~500× cell coverage per sgRNA) were recovered for further analysis.
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7

Notch Signaling Activation in Mouse and Human T Cells

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Mouse and human T cells were activated using the methods mentioned above. To activate Notch signalling, activated T cells were cocultured with Notch ligand-expressing OP9 feeder cells, OP9-DL1 cells for mouse T cells and OP9-hDL1 cells for human T cells. We cultured mouse T cells and OP9-DL1 cells with mouse IL-7 (PeproTech; 10 ng ml−1), an anti-mouse IFN-γ antibody (R4-6A2; 2 μg ml−1), in alpha MEM for 11–12 days. Human T cells and OP9-hDL1 cells were cocultured with human IL-7 (PeproTech; 10 ng ml−1), an anti-human IFN-γ antibody (Bio Legend, B27; 2 μg ml−1), in alpha MEM for 11 days.
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8

Retroviral Transduction of OT-I Cells

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pRV-luc plasmid was co-transfected in Plate-E with the packaging plasmid, pCL-ECO, using lipofectamine 2000 (Invitrogen, Carlsbad, CA). Supernatants were collected 48 and 72 h later and were combined to generate stocks, which were then used to transduce OT-I cells. Briefly, single-cell suspensions of OT-I cells were activated with Concanavalin A (2 μg/ml; Sigma, St. Louis, MO) and mouse IL7 (1ng/ml; PeproTech, Rocky Hill, NJ) for 24 h. Cells were then transduced with pRV-luc retrovirus in non–tissue culture 24-well plates precoated with RetroNectin (Takara Bio. Inc., Shiga, Japan). The transduced OT-I cells were then cultured for 48 hours in fresh medium supplemented with hIL-2 (300 U/ml; NIH AIDS Reagent Program, Germantown, MD) to allow the cells to recover. They were then used directly for adoptive transfer.
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9

In vitro Lymphoid Progenitor Culture

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Ebf1-deficient lymphoid progenitor cell lines (31 ) were cultured in IMDM (Wako) with 10% fetal bovine serum (Sigma–Aldrich), penicillin–streptomycin–glutamine, 50 μM β-mercaptoethanol (Sigma–Aldrich), 10 ng/ml mouse SCF (PeproTech), 10 ng/ml human Flt3L (PeproTech), 10 ng/ml mouse IL-7 (PeproTech) with mitomycin C (Wako) treated OP9. For T-cell induction, lymphoid progenitors were cocultured on OP9-DLL4 for 2 days under the same conditions as the maintenance of the lymphoid progenitors.
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10

Proliferation Assay of IEL and SP CD4+ Cells

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1 x 105 of sort-purified IEL- or SP CD4+ cells were labelled with 2.5μM CFSE (CellTrace CFSE Cell Proliferation Kit, ThermoFisher SCIENTIFIC), and then stimulated with PMA+ionomycin PMA+ionomycin (PMA 50ng/ml, ionomycin 500ng/ml) in the complete medium with 100 U/mL recombinant human IL2 (Roche), 50 ng/mL mouse IL7 (Peprotech), and 50 ng/mL mouse IL15 (Peprotech) under the condition of 37°C, 5% CO2. After 72 hours, cells were harvested and stained with appropriate antibodies and analyzed by FACS Canto II (BD Bioscience).
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