The largest database of trusted experimental protocols

265 protocols using anti gfp

1

Ubiquitination Assay in HEK 293T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
For ubiquitination assays, HEK 293 T cells were transfected with the indicated plasmids using Lipofectamine 2000 for 6 h. Then, the media were replaced with normal culture media. After transfecting for 24 h, the cells were treated with 10 µM MG132 for 2 h before harvesting. The cells were then lysed using co-IP lysis buffer supplemented with 20 mM NEM (Sigma, Burlington, MA). The cell lysates were centrifuged at 15,000 rpm at 4 °C for 20 min. Among the same amount of protein in the supernatant by by bicinchoninic acid (BCA) analysis, 10% supernatant was immunoblotted to confirm each protein expression. The remaining supernatants were incubated with 1 mg anti-GFP (Santacruz, CA, USA) or anti-RFP antibodies overnight at 4 °C. The antibody-binding proteins were pulled down by incubation for 1 h at 4 °C with 20 µL Protein A or G magnetic beads (ThermoFisher, Waltham, MA). The beads were washed three times with co-immunoprecipitation lysis buffer and heated in 1 × SDS sample loading buffer. The eluted proteins were immunoblotted with anti-RFP, anti-GFP, anti-ubiquitin (Santacruz, CA), or anti-β-actin antibodies.
+ Open protocol
+ Expand
2

Immunoblot Analysis of SF Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lysates of SFs or extracts from synovial tissues were subjected to immunoblot with anti-p73 (Santa Cruz), anti-GFP (Santa Cruz), or anti-cadherin-11 (Cell Signaling), and the blots were re-probed with anti-β-actin (Sigma-Aldrich) as a quantitative control, as previously described [8 (link), 20 (link)]. AdLacZ or Ad37AA-transduced SF lysates were immunoprecitated with anti-iASPP (Santa Cruz), followed by immunoblotted with anti-p73 (Santa Cruz) or anti-GFP (Santa Cruz), and small quantities (10%) were snapped for immunoblot analysis as an input control.
+ Open protocol
+ Expand
3

Western Blot Analysis of Motoneuron Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primary motoneurons or E18 spinal cord tissue, respectively, were lysed with cytosolic and nuclear fractionation buffer, solubilized in Laemmli buffer (125 mM Tris, pH 6.8, 4% SDS, 10% β-mercaptoethanol, 20% glycerol, and 0.004% bromophenol blue) and boiled for 10 min at 99°C. Proteins were then subjected to SDS-PAGE, blotted onto PVDF membrane, incubated with the corresponding antibodies, and developed with either ECL or ECL Advance Systems (GE Healthcare) on X-ray film (Fuji super RX). Western blots were scanned and quantified by densitometry analysis with ImageJ (National Institutes of Health). For Western Blot analysis the following primary and secondary antibodies were used: anti-SMN (BD Biosciences, 610646, 1∶3000), anti-hnRNP R (Abcam, ab30930, 1∶3000 or polypeptide antiserum aa1-18, ICN, Wuerzburg, 1∶3000), anti-GFP (Santa Cruz, sc-8334, 1∶4000), anti-GAPDH (Millipore, 6C5, 1∶4000), anti-α tubulin (T5168, Sigma, 1∶4000), anti-histone H3 (Abcam, ab8580, 1∶20 000), anti-calnexin (Abcam, ab22595, 1∶5000), anti-GFP (Santa Cruz, sc-8334, 1∶4000), anti-mouse IgG (Jackson Immunoresearch, 115-035-003, 1∶10000), anti-rabbit IgG (Jackson Immunoresearch, 111-035-003, 1∶10000), anti-mouse light chain-specific (Jackson Immunoresearch, 111-035-174, 1∶10000) and anti-rabbit light chain-specific (Jackson Immunoresearch, 211-032-171, 1∶10000).
+ Open protocol
+ Expand
4

Immunological and Biochemical Profiling

Check if the same lab product or an alternative is used in the 5 most similar protocols
CD4-Percp (eBioscience, 46-0041), IL-4-APC (MACS, 130-103-002), IL-5-PE (eBioscience, 12-7052), and IL-13-PE Cy7 (eBioscience, 25-7133) were used for flow cytometry. Anti-IL-33 (Abcam, Ab54385) was used for immunofluorescence of mice lung tissues. Anti-PTRF (CST, 46379), anti-Flag (Sigma-Aldrich, M2), anti-HA (Santa Cruz, sc-7392), anti-GFP (Santa Cruz, sc-9996), anti-pTyr (Santa Cruz, sc-7020), anti-β-Actin (Sungene biotech, KM9001T), anti-α-Tubulin (Sungen biotech, KM9003T), and anti-Lamin B (CST, 13435) were used for immunoblotting.
+ Open protocol
+ Expand
5

Generation and Characterization of Anti-BEX4 Antibodies

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mouse polyclonal antibodies against human BEX4 protein were generated in C57BL/6 mice. Briefly, purified GST-BEX4 protein was injected four times intraperitoneally. Rabbit polyclonal antibodies against C-terminal polypeptides 89–106 of human BEX4 protein were commercially generated (Youngin Frontier, Seoul, Korea). The other antibodies used in this study were as follows: anti-GFP, anti-PLK1, anti-CDK1, anti-aurora A, anti-cIAP-1, anti-cdc20 (Santa Cruz Biotechnology, Dallas, TX, USA), anti-actin (Sigma-Aldrich, St. Louis, MO, USA), anti-poly(ADP-ribose) polymerase-1 (PARP), anti-cleaved-caspase 9, cleaved-caspase 7, anti-active-caspase 3, anti-phospho-threonine (p-Thr) (Cell Signaling Technology, Danvers, MA, USA), anti-aurora B (BD Biosciences PharMingen, San Diego, CA, USA), anti-securin (PTTG1; Zymed, San Francisco, CA, USA), anti-Myc (Bethyl Laboratories, Montgomery, TX, USA), and Alexa Fluor (Invitrogen, Leek, The Netherlands). The following reagents were used: MG132, cycloheximide (CHX), dimethyl sulfoxide (DMSO) (AG Scientific, San Diego, CA, USA), nocodazole (Sigma-Aldrich), and PLK1 kinase inhibitor BI2536 (Axon Medchem, Groningen, Netherlands).
+ Open protocol
+ Expand
6

Western Blot Analysis of Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Anti-FLAG and anti-beta actin (Sigma-Aldrich, USA); anti-GNL1, anti-RPS20, anti-CDK1 and anti-MDM2 (Abcam, UK); anti-GFP, anti-Cyclin B1 and anti-p53 (Santa Cruz, USA); anti-p21, anti-Cyclin D1, anti-CDK4, anti-pRbSer-780, anti-Rb and anti-E2F1 (Cell Signaling Technology Inc., USA) antibodies were used in western blot analysis for checking protein expression.
+ Open protocol
+ Expand
7

Comprehensive Antibody Characterization Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mouse anti-HA tag, anti–β-COP, and anti-tubulin were from Sigma-Aldrich, and anti-GFP was from Santa Cruz Biotechnology (Dallas, TX). Rabbit anti–GM-130 was from Abcam (Cambridge, England). Mouse anti-human ERManI was a kind gift from Richard Sifers (Baylor College, Houston, TX) (used only for human cells) or was from Santa Cruz Biotechnology (used for mouse cells). Rabbit anti-calnexin was from Sigma-Aldrich, and anti-dsRED was from MBL. Goat anti-mouse immunoglobulin G (IgG) linked to horseradish peroxidase (HRP) and goat anti-rabbit IgG-HRP were from Jackson Labs (West Grove, PA). Goat anti-mouse Dylight 594 and goat anti-rabbit Dylight 488 were from Thermo Scientific (Barrington, IL). Rabbit polyclonal anti-H2 N-terminus was previously described (Tolchinsky et al., 1996 (link)), Goat anti-mouse IgG linked to agarose beads was from Sigma-Aldrich. Rabbit anti-Cab45 was described before (Scherer et al., 1996 (link)).
+ Open protocol
+ Expand
8

Western Blot Analysis of RUVBL1/2

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blot analyses were performed as previously described [53 (link)]. Antibodies used were anti-RUVBL1 (sc-15259, Santa Cruz, 1:500), anti-RUVBL2 (gift from Matthias Gstaiger, ETH Zurich, 1:1000), anti-βTubulin (mouse monoclonal sc-5274, Santa Cruz, 1:1000), anti-TFIIH (rabbit polyclonal sc-293, Santa Cruz, 1:4000), anti-FLAG (F-3165, Sigma, 1:20000) and anti-GFP (mouse monoclonal, sc-9996, Santa Cruz, 1:500).
+ Open protocol
+ Expand
9

Immunoblot Analysis of Yeast Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were mechanically lysed in the presence of phosphatase inhibitors. Extracts were analyzed by SDS–PAGE and immuno­blotting with the following antibodies: anti-Pep12 (Invitrogen, Thermo Fisher Scientific, Waltham, MA), anti–glucose-6-phosphate dehydrogenase (G6PDH; Sigma-Aldrich, St. Louis, MO), anti–phosphoglycerate kinase (PGK; Novex, Thermo Fisher Scientific, Waltham, MA), anti-GFP (Santa Cruz Biotechnology, Dallas, TX, or Roche, Burgess Hill, UK), anti-PKC (pan) zeta T410 (Cell Signaling, Danvers, MA) for phospho-Ypk1(T504), anti-phospho-Ypk1(T662) (Niles et al., 2012 (link)), anti-Ypk1 (Cell Signaling), and anti–phospho-p44/42 MAPK (Cell Signaling) for phospho-Slt2. Levels of GFP-Pkh1, Ypk1, phospho-Ypk1, and phospho-Slt2 were normalized to protein loading controls (Pep12, G6PDH, or PGK). See the Supplemental Materials and Methods for additional details.
+ Open protocol
+ Expand
10

Immunoblotting Assay for Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total Cell Extracts (TCEs) were prepared and resolved as previously described [13 (link)]. The following Abs were employed: anti-Ras (OP40, 1:500 diluition; Calbiochem, Cambridge, UK), anti-E1A (M58 clone, 1:500 diluition; BD Biosciences, San Jose, CA, USA), anti-GAPDH (1:1000 diluition; Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-HIPK2 (kindly provided by Dr. L. Shmidtz); anti-GFP (1:500 diluition; Santa Cruz Biotechnology, Santa Cruz, CA, USA); anti-alpha-tubulin and anti-Actin (1:1000 diluition; Immunological Science, Rome, Italy); anti-HRP-conjugated goat anti-mouse and anti-rabbit (Bio-Rad Laboratories, Hercules, CA, USA). Immunoreactivity was determined using the ECL-chemiluminescence reaction (Amersham, Piscataway, NJ, USA) following the manufacturer's instructions.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!