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Pi 3 5 p2

Manufactured by Echelon Biosciences
Sourced in United States

PI(3,5)P2 is a phosphoinositide compound that functions as a signaling lipid in biological systems. It plays a role in the regulation of cellular processes, including membrane trafficking and cellular homeostasis.

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4 protocols using pi 3 5 p2

1

Electrophysiological Characterization of TPC2 Variants

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Human TPC2 WT and polymorphic TPC2 variants (C-terminally fused to YFP) were transiently transfected into HEK293 cells using TurboFect Transfection Reagent (Thermo Fisher, Waltham, MA, USA). For whole-endolysosomal patch-clamp recordings, isolated intact endolysosomes from HEK293 cells were manually isolated after vacuolin treatment for at least 2 h. Currents were recorded using an EPC-10 patch-clamp amplifier and PatchMaster acquisition software (HEKA, www.heka.com, accessed on 13 January 2024). Data were digitized at 40 kHz and filtered at 2.8 kHz. Cytoplasmic solution contained 140 mM potassium methanesulfonate (KMSA), 5 mM KOH, 4 mM NaCl, 0.39 mM CaCl2, 1 mM EGTA, and 20 mM HEPES (pH adjusted with KOH to 7.2). Luminal solution was 140 mM NaMSA, 5 mM KMSA, 2 mM CaMSA, 1 mM CaCl2, 10 mM HEPES, and 10 mM MES (pH adjusted with MSA to 4.6). For measurements with PI(3,5)P2 (water-soluble diC8 form, from Echelon Biosciences, Salt Lake City, UT, USA), PI(3,5)P2 was added to the cytoplasmic solution to give a final concentration of 1µM. 500 ms voltage ramps from −100 to +100 mV were applied every 5 s from a holding potential of 0 mV. Current amplitudes at −100 mV were determined from individual ramp current recordings, and current density was calculated by dividing by cell capacitance. All recordings were performed at 23–25 °C.
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2

Probing Subcellular Dynamics with Chemical Tools

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Chemicals were obtained from following vendors: ML-SA1 (Princeton BioMolecular Research), Simvastatin (Sigma), PI(3,5)P2 (Echelon), ML-SI3 (AKOS), BAPTA-AM (Invitrogen), YM 201636 (Symansis), and Ciliobrevin D (EMD Millipore). Antibodies were purchased from Sigma (γ-tubulin, T5326, clone GTU-88, used at 1:500), BD Biosciences (Dynamitin, 611002, clone 25/Dynactin p50, 1:250 for pull-down, and 1:1000 for western blot), Invitrogen (GFP, A11121, clone 11E5, 1:250 for pull-down, and 1:5000 for western blot), and Novus Biologicals (ALG-2, H00010016-M01, clone 2B4, 1:500 for western blot; mCherry, NBP1-96752, clone 1C51, 1:250 for pull-down, and 1:5000 for western blot).
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3

Probing Subcellular Dynamics with Chemical Tools

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Chemicals were obtained from following vendors: ML-SA1 (Princeton BioMolecular Research), Simvastatin (Sigma), PI(3,5)P2 (Echelon), ML-SI3 (AKOS), BAPTA-AM (Invitrogen), YM 201636 (Symansis), and Ciliobrevin D (EMD Millipore). Antibodies were purchased from Sigma (γ-tubulin, T5326, clone GTU-88, used at 1:500), BD Biosciences (Dynamitin, 611002, clone 25/Dynactin p50, 1:250 for pull-down, and 1:1000 for western blot), Invitrogen (GFP, A11121, clone 11E5, 1:250 for pull-down, and 1:5000 for western blot), and Novus Biologicals (ALG-2, H00010016-M01, clone 2B4, 1:500 for western blot; mCherry, NBP1-96752, clone 1C51, 1:250 for pull-down, and 1:5000 for western blot).
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4

Enzymatic Activity of PIKfyve-Fig4 Complex

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Purified PIKfyve was mixed with purified Fig4/Vac14 complexes to achieve an equimolar ratio of PIKfyve to Fig4, with a final concentration of 100 nM ternary complex. For Fig4/Vac14 only assays, Fig4/Vac14 complexes were directly diluted to 100 nM. Reactions were carried out in a 50 ul volume containing 50 nM protein complex, 50 uM diC8 PI3P or PI(3,5)P2 (Echelon Biosciences), and 2 mM MgCl2 for 1 hour at 37°C. Released phosphate was quantitated using a malachite green colorimetric assay in 96-well plate format according to the manufacturer’s instructions (Cayman Chemical #30412051), with measurements performed on a BioTek Synergy H1M microplate reader.
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