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Goat anti rabbit cy3

Manufactured by Jackson ImmunoResearch
Sourced in United States, United Kingdom

Goat anti-rabbit Cy3 is a secondary antibody conjugated with the fluorescent dye Cy3. It is designed to detect and visualize primary antibodies raised in rabbit.

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84 protocols using goat anti rabbit cy3

1

Immunohistochemical Analysis of Brain Samples

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Brains were dissected using forceps (FST 11413–11) in 1X PBS and then transferred to PBS on ice. Immunohistochemistry was performed as previously described with some modifications [61 (link)]. Brains were fixed in 1X PBS with 4% paraformaldehyde for 30 min. After washing three times (5 min each) in PBST (1X PBS with 0.5% Triton-100), antigen retrieval was performed by incubating brains in 1X PBS with 0.1% SDS and 20% H2O2 for 30 min. Next, brains were washed three times in PBST (5 min each), blocked in 10% NGS for one hour, and incubated in the primary antibody solution for three days. After washing overnight in PBST, brains were transferred to the secondary antibody solution overnight and then washed in PBST overnight. Samples were mounted using Vectashield Mounting Medium (VECTASHIELD) and imaged using a Nikon A1 Confocal Microscope. Primary antibodies used were rabbit anti-dsRed (1:200, Takara Bio), rabbit anti-GFP (1:500, Invitrogen), mouse anti-GFP (1:500, Sigma-Aldrich), and mouse anti-HA (1:200, Invitrogen). Secondary antibodies included goat anti-rabbit Cy3 (1:250, Jackson Immuno), goat anti-rabbit Alexa Fluor 488 (1:250, Jackson Immuno), goat anti-mouse CF488A (1:250, Sigma-Aldrich), and goat anti-mouse TRITC (1:250, Invitrogen).
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2

Immunofluorescent Staining of Lung Cancer Biopsies

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Biopsies taken from fresh lung cancer resection specimens were snap frozen in liquid nitrogen and stored at −80°C until further processing. Sections of 5 μm, mounted on poly‐L‐lysine coated slides, were stored at −80°C until staining. Immunofluorescent staining of GLUT1, CAIX, MCT1, MCT4 and vascular density were as described previously by Meijer et al.17Staining for SLC1A5 and GLS2 was performed on two consecutive tumor sections by incubating the sections with rabbit anti‐SLC1A5 (Abcam, Cambridge, UK) and rabbit anti‐GLS2 (ThermoFischer Scientific, Waltham, Massachusets, USA) respectively, diluted 1:150 in PAD (Bio‐Rad Laboratories Inc., Richmond, CA, USA), overnight at 4°C for SLC1A5 and 45 minutes at 37°C for GLS2. For SLC1A5, the second and third incubation took 30 minutes at 37°C with goat anti‐rabbitCy3 (Jackson Immuno Research Laboratories Inc.; West Grove, PA, USA) and donkey anti‐goatCy3 (Jackson) respectively, diluted 1:600 in PAD. For GLS2, the second incubation took 45 minutes at 37°C with goat anti‐rabbit Cy3, diluted 1:300 in PAD. After staining, sections were mounted in Fluoromount (SERVA Electrophoresis GmbH, Heidelberg, Germany).
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3

Oleic Acid Induced Lipid Droplet Formation

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NIH cells (Fig. 2) were seeded onto cover slips placed in 24-well plates. After 24 h, the medium was changed to new medium containing 360 μM oleic acid. After 20 h, the cells were fixed with 2% formaldehyde for 10 min and stored at 4°C in PBS. For immunolabeling, the cells were treated with Avidin/Biotin Blocking kit (Vector Laboratories), and 1% BSA in PBS for 20 min. The cells were then incubated 2h at room temperature with mouse anti-vinculin (1:100, clone SPM227, Abcam), followed by 30 min biotinylated monovalent donkey anti-mouse IgG (1:200, Jackson ImmunoResearch) and 30 min with Atto425-conjugated streptavidin (1:200, ATTO-TEC). The cells were then incubated for 2h at room temperature with guinea pig anti-ADRP (1:400, Fitzgerald), rabbit anti-mouse syntaxin 5 (1:150, Synaptic System) and rat anti-mouse LAMP1 (1:100, clone 1D4B, Abcam) followed by 30 min incubation with goat anti-guinea pig AF488 (1:400, Life Technologies), goat anti-rabbit Cy3 (1:250, Jackson ImmunoResearch), mouse anti-rat PerCP-eFluor710 (1:100, Affymetrix) and phalloidin-Atto594 (5 μL/mL, Sigma-Aldrich); in the last 5 min, 3 drops of DAPI (2 μg/mL) was added to each well. All incubation steps contained 0.1% saponin and all washing steps contained 0.05% saponin for permeabilization. The cover slips were mounted onto microscope slides with Prolong Gold antifade reagent (Life Technologies).
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4

Comprehensive Antibody Staining Protocol

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Antibody staining was performed as previously described (Lepage et al., 2014 (link)). Dilutions were as follows: rhodamine-phalloidin (1:200), anti-E-cadherin (Abcam, 1:1000), anti-RAB11B (Abcam 1:200), anti-ZO-1 (ThermoFisher Scientific, 1:500), anti-phospho-myosin-light chain 2 Ser 19 (Cell Signaling, 1:100). Embryos were mounted in either 80% glycerol or 0.05% low-melt agarose. Secondary antibodies used were goat-anti-mouse Alexa 488 (Invitrogen A11001, 1:500), goat anti-rabbit Alexa 488 (Invitrogen A11008, 1:500), goat anti-rabbit-Cy3 (Jackson ImmunoResearch AB-2338006,1:500). Sytox green (Invitrogen) was diluted to 0.5 mM in fixative. For embryos co-labelled with phalloidin and antibody, phalloidin was incubated at 1:200 dilution with primary antibody overnight at 4oC in block solution.
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5

Immunofluorescence Staining of IRF-1 in Mouse Liver

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Immunofluorescence staining and imaging of IRF-1 in mouse liver tissue was performed as described (26 (link)). Primary antibody was rabbit anti-IRF-1 (Santa Cruz Biotechnology, Inc.). A secondary antibody (goat anti-rabbit Cy3; Jackson ImmunoResearch Laboratories, Inc.) was applied with F-actin counterstain (Alexa Fluor 488 Phalloidin; Life Technologies, Grand Island, NY).
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6

Multicolor Immunofluorescence Labeling

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Goat anti-mouse-IRDye-800 - Rockland, 610–132- 121 (IB); Donkey anti-rabbit-Alexa Fluor-680 – Invitrogen, A10043 (IB); Goat Anti-Rabbit-Cy3 – Jackson ImmunoResearch, 115-165-144 (IF); Donkey anti-mouse-FITC – Jackson ImmunoResearch, 715-225-151 (IF); Goat anti-Mouse-Alexa Fluor-680 – Invitrogen, A21058 (IF).
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7

Immunostaining of Drosophila Midgut

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Midguts were dissected from flies at 10, 20 and 40 days, fixed in 4% paraformaldehyde and stained as described [17 (link)]. Following washing, samples were mounted and imaged using the Leica camera attachment using LAS V4.1 software, or the Zeiss 780 combined confocal/FCS/NLO system, mounted on an inverted Axio Observer Z1. Fixed tissue was incubated overnight with mouse anti-gal 1:500 (Invitrogen); rabbit anti-pH3 1:300 (Invitrogen) or rabbit anti-INDY 1:300 [10 (link)] primary antibodies diluted in PBT [0.1%Triton X-100 in phosphate-buffered saline (PBS)] at 4°C. Following washing and blocking, tissue was incubated with the goat anti-rabbit Cy3 1:300 (Jackson) or goat anti-mouse FITC 1:300 (Jackson) secondary antibodies and DAPI 1:1000 (Invitrogen) diluted in PBT and 2% donkey serum for 1 hour at room temperature. Images were analyzed using Adobe Photoshop or Image J. Variability between different regions of the gut was reduced by quantifying images from the same designated region for each genotype in a 0.06x 0.02cm area. Cells were counted, values averaged and standard deviation calculated separately.
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8

Whole-Mount Immunohistochemistry of Zebrafish Embryos

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Whole-mount immunohistochemistry followed general procedures for maximizing tissue penetration [76 (link)]. Embryos of 5–6 dpf were fixed in cold 4% paraformaldehyde / phosphate-buffered saline (PF-PBS) overnight at 4°C. After rinsing in PBS, the tissues were blocked 2–4 hours with 10% goat serum in antibody solution (1x PBS + 0.5% Triton-X +2% DMSO). The primary antibody, a rabbit polyclonal against zebrafish L-plastin, was the kind gift of Dr. Michael Redd. This reagent was diluted 1:20,000–1:50,000 in antibody solution and applied to the tissues for 1–3 days at 4°C. After 5–6 rinses in PBS, the tissue was incubated in a fresh aliquot of antibody solution containing a red fluorescent secondary (1:200, goat anti-rabbit Cy3, Jackson ImmunoResearch) and a nuclear counterstain (1:1000, 5 mg/mL DAPI in DMSO). After 1–3 days at 4°C in the dark, the embryos were rinsed 4–5 times in PBS, cleared in 50% glycerol and mounted in glycerol-compatible anti-fade medium (CFM-Mount, Electron Microscopy Sciences). Confocal stacks were obtained with a Zeiss LSM 800 and processed using Zeiss Efficient Navigation (‘ZEN’) imaging software.
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9

Immunodetection of Neural Progenitors

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Antibodies for neuroblast (NB) and intermediate neural progenitor (INP) detection were used at the following dilutions in 0.3% PBST (PBS + 10% Triton-X 100): Rabbit anti-phospho-Histone H3 (pH3; Cell Signaling) at 1:500, rat anti-Deadpan (Abcam) at 1:75, goat anti-rabbit Cy3 (Jackson Immunoresearch) at 1:300, and goat anti-rat Alexa 488 (Jackson ImmunoResearch) at 1:250. Anti-Deadpan marks all NBs and INPs and was used to define and exclude the optic lobe during analysis. Anti-pH3 marks all proliferating NBs and progenitor cells in M phase. Antibodies used for the detection of fasciculating axons in the mushroom body were used at the following dilutions in 0.1% PBST: Mouse anti-FasciclinII (Developmental Studies Hybridoma Bank) at 1:20 and goat anti-mouse Alexa 488 (Jackson ImmunoResearch) at 1:1000.
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10

Immunofluorescent Localization of PI5P4Kα and LAMP1 in Mouse Prostate

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Adult C57BL/6JRj mouse prostates were harvested and paraffin-embedded. Tissue serial sections were deparaffinized in xylene and rehydrated using decreasing concentrations of ethanol (100 to 95 to 70% to H2O). Heat-induced epitope retrieval was used at a setting of 98°C for 35 min in tris-EDTA buffer. Slides were left to return to room temperature, then washed in Tris-buffered saline (TBS), blocked in 5% normal goat serum at room temperature, and probed with primary antibodies overnight at 4°C in an immunostain moisture chamber. Protein targets were detected using 1:200 PI5P4Kα polyclonal antibody (Proteintech, 1249-1-AP) and 1:200 LAMP1 monoclonal antibody (Abcam; Ab24871) with 1:300 goat anti-rabbit Cy3 (Jackson ImmunoResearch, 111-165-003) or donkey anti-rabbit A488 (Jackson ImmunoResearch, 712-545-150) secondary antibody. DAPI (100 ng/ml) was used as nuclear counterstain, and ProLong Gold (Thermo Fisher Scientific; P36930) was used for mounting. Images were acquired with 60× oil immersion on Zeiss LSM 710 confocal microscope.
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