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Agar 100

Manufactured by Agar Scientific
Sourced in United Kingdom

Agar 100 is a high-performance epoxy resin designed for use in electron microscopy and related applications. It is a two-component system that cures at room temperature to form a hard, durable polymer. Agar 100 provides excellent dimensional stability and heat resistance, making it suitable for a variety of scientific and industrial applications.

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38 protocols using agar 100

1

Ultrastructural Analysis of Centrioles

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Wing-discs from 3rd instar larvae were prepared as described previously (Stevens et al., 2010). Briefly, the wing discs were dissected in PBS and then fixed in 2.5% glutaraldehyde, 4% paraformaldehyde, and 0.1% tannic acid (from a freshly prepared 10% stock) in 0.1 M PIPES buffer (pH 7.2) for 1 h (up to 2 h) at RT and left overnight in the fridge at 4°C. Samples were then washed twice in 0.1 M PIPES, followed by one wash in 50 mM glycine in 0.1 M PIPES to quench free aldehydes, and then another wash in 0.1 M PIPES. Samples were then post-fixed in 1% OsO4 for 2 h at RT, followed by extensive washing in distilled water. Samples were stained with 0.5% uranyl acetate overnight at 4°C, washed in distilled water, dehydrated in an ethanol series and embedded in Agar100 (Agar Scientific). Blocks were polymerized at 50°C for 24–42 h. Semi-thin serial sections (100 nm) were obtained in a Leica EM UC7 ultramicrotome (Leica Microsystems) and stained in lead citrate. Images of centrioles in longitudinal orientation were taken on a TECNAI T12 transmission microscope (FEI) at 13,000X magnification to measure centriole length from the wing discs. The length of the MT doublets within the electron-dense area was measured using the line tool in Fiji (ImageJ).
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2

Electron Microscopy Sample Preparation

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Cells were fixed for 1h at room temperature in 2.5% glutaraldehyde in culture medium, and postfixed in 2% OsO4 in the same buffer. After serial dehydration in increasing ethanol concentrations, samples were embedded in agar 100 (Agar Scientific Ltd., United Kingdom) and left to polymerize for 2 days at 60°C. Ultrathin sections (50 to 70 nm thick) were collected in Formvar-carbon-coated copper grids by using a Leica EM UC6 ultramicrotome and stained with uranyl acetate and lead citrate. Observations were made on a Tecnai10 electron microscope (FEI), and images were captured with an Olympus VELETA camera and processed with AnalySIS software.
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3

Lung Tissue Ultrastructure Imaging

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For electron microscopy, lung tissue was fixed in 2.5% (wt/vol) glutaraldehyde in 0.1 M cacodylate buffer at pH 7.3 for 3 to 4 hours. After dehydration, the tissue was embedded in resin (AGAR-100, Agar Scientific). Ultrathin lung sections (90 nm) were contrasted with uranyl acetate/lead citrate and studied with a Zeiss EM 900 electron microscope. Mitochondrial cristae were identified on micrographs made with a ThermoFisher (formerly, FEI) Tecnai G2 20 electron microscope, operated at 120 kV, with an Ametek (formerly, Gatan) Ultrascan 1000 camera.
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4

Ultrastructural Analysis of Mouse Testis

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Freshly isolated testes from adult mice were cut into small pieces and immediately fixed by immersion in 5% glutaraldehyde in 0.2 M phosphate buffer (pH 7.4) for 24 h, followed by washing in 0.2 M phosphate buffer (pH 7.4). For epoxy resin embedding, the samples were postfixed in 1% osmium tetroxide in aqua bidest, stained in half-saturated watery uranyl acetate, dehydrated in an ascending ethanol series, and finally embedded in Agar 100 (Agar Scientific Ltd., Stansted, UK). Ultrathin sections (~70 nm) were cut using an ultramicrotome and examined by TEM (Zeiss EM 900, Oberkochen, Germany). Digital images were captured with a slow-scan 2K CCD camera (TRS, Tröndle, Moorenweis, Germany) and processed using Adobe Photoshop CS5 (Adobe Inc., San Jose, CA, USA).
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5

Tissue Preparation for TEM Imaging

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Tissue samples were fixed with 2.5% glutaraldehyde (Assing Spa, R1012) in 0.1 M cacodylate buffer for 1 h at 4°C (sodium cacodylate trihydrate, Sigma-Aldrich, C4945), and postfixed in 1% osmium tetroxide (Sigma-Aldrich, 75632) in 0.1 M cacodylate buffer for 1 h. Samples were then dehydrated in graded ethanol and embedded in Epon resin (AGAR 100, Agar Scientific R1045). Ultrathin sections were stained with 2% uranyl acetate (Sigma-Aldrich, 73943) and observed under a Zeiss EM900 transmission electron microscope. Images were captured digitally with a Mega View II digital camera (SIS; Zeiss).
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6

Electron Microscopy Tissue Preparation

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Cells were fixed for 1 h at room temperature in 2.5% glutaraldehyde in culture medium, and postfixed in 2% OsO4 in the same buffer. After serial dehydration in increasing ethanol concentrations, samples were embedded in agar 100 (Agar Scientific Ltd., UK) and left to polymerize for 2 days at 60 °C. Ultrathin sections (50–70-nm thick) were collected in Formvar-carbon-coated copper grids by using a Leica EM UC6 ultramicrotome and stained with uranyl acetate and lead citrate. Observations were made on a Tecnai10 electron microscope (FEI), and images were captured with an Olympus VELETA camera and processed with AnalySIS and Adobe Photoshop softwares.
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7

Transmission Electron Microscopy Protocol

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TEM analysis was performed as described (Fontaine et al., 2017 (link)). Briefly, cells were fixed for 1h at room temperature in 2.5% glutaraldehyde in culture medium, and postfixed in 2% OsO4 in the same buffer. After serial dehydration in increasing ethanol concentrations, samples were embedded in agar 100 (Agar Scientific Ltd., United Kingdom) and left to polymerize for 2 days at 60°C. Ultrathin sections (50 to 70 nm thick) were collected in Formvar-carbon-coated copper grids by using a Leica EM UC6 ultramicrotome and stained with uranyl acetate and lead citrate. Observations were made on a Tecnai10 electron microscope (FEI), and images were captured with an Olympus VELETA camera and processed with iTEM software (Olympus GMBH, Germany).
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8

Electron Microscopy Sample Preparation

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Cells were fixed for 1h at room temperature in 2.5% glutaraldehyde in culture medium, and postfixed in 2% OsO4 in the same buffer. After serial dehydration in increasing ethanol concentrations, samples were embedded in agar 100 (Agar Scientific Ltd., United Kingdom) and left to polymerize for 2 days at 60°C. Ultrathin sections (50 to 70 nm thick) were collected in Formvar-carbon-coated copper grids by using a Leica EM UC6 ultramicrotome and stained with uranyl acetate and lead citrate. Observations were made on a Tecnai10 electron microscope (FEI), and images were captured with an Olympus VELETA camera and processed with AnalySIS software.
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9

Ultrastructural Examination of Feline Skin

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Standard clinical and pathological examinations were done. Necropsy was performed on all affected kittens, and representative organ samples were fixed in 10% neutral buffered formalin, embedded in paraffin, and stained with hematoxylin and eosin (HE). Additionally, histochemical stains were performed on the skin, included periodic acid–Schiff reaction (PAS) and Masson trichrome stain. The skin of one affected kitten was examined by transmission electron microscopy. For this purpose, skin samples were fixed with 1.5% glutaraldehyde and 1.5% formaldehyde (freshly made from paraformaldehyde) in 0.15 M HEPES buffer. For epoxy resin embedding, cells were postfixed in 1% osmium tetroxide in aqua bidest, stained in half-saturated watery uranyl acetate, dehydrated in an ascending ethanol series, and finally embedded in Agar 100 (Agar scientific Ltd., UK). Ultrathin sections were cut using an ultramicrotome (Reichert Ultracut E, Leica) and examined with a transmission electron microscope (Zeiss EM 902). Digital images were captured with a slow-scan 2 K CCD camera (TRS, Tröndle, Moorenweis, Germany).
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10

Ultrastructural Analysis of Pig Airway Tissue

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Pig airway tissue was fixed in Karnovsky's fixative (2% paraformaldehyde, 2.5% glutaraldehyde in 0.05 m sodium cacodylate buffer (pH 7.2)) for 24 h, followed by preparation for TEM by sequential staining using 1% OsO4 for 4 h, 1% tannic acid for 3 h, and 1% uranyl acetate overnight. Samples were dehydrated and embedded in epoxy resin (Agar 100, Agar Scientific, Stansted, UK). Electron microscopy was conducted on 50-nm sections cut using an Ultracut E (Reichert, New York, NY) microtome and collected on mesh copper support grids. The sections were contrasted using lead citrate and tannic acid, and images were acquired using a Leo 912 Omega lanthanum hexaboride gun TEM (Carl Zeiss) at 120 kV and a MegaView III CCD camera (SiS, Münster, Germany).
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