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Dmi4000b inverted microscope

Manufactured by Leica
Sourced in Germany, Spain

The Leica DMI4000B is an inverted microscope designed for a range of laboratory applications. It features a modular design and supports various illumination techniques, including bright-field, phase contrast, and fluorescence microscopy. The DMI4000B is equipped with a high-resolution digital camera and touchscreen controls for precise specimen observation and image capture.

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65 protocols using dmi4000b inverted microscope

1

Quantifying Tat-induced Multinucleation in Cells

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Jurkat-Tat101 and Jurkat-Tat72 or PBMCs transiently transfected with Tat101 were adhered on PolyPrep slides (Sigma-Aldrich) and fixed with 2% paraformaldehyde in PBS1X. Immunofluorescence assays were performed as previously described.[8 (link)] The number of giant cells with multi-lobed nuclei was calculated by acquiring 60 fields—containing an average number of cells close to 40—of each cell type with a Leica DMI 4000B Inverted Microscope (Leica Microsystems) after staining the cells with a monoclonal antibody against α-tubulin (Sigma-Aldrich), followed by secondary antibody conjugated to Alexa 546 (Thermofisher). Nuclei were stained with 4’,6-diamidino-2-phenylindole (DAPI) (Sigma-Aldrich). Images were obtained with a Leica DMI 4000B Inverted Microscope (Leica Microsystems). The percentage of cells showing a giant, multi-lobed nuclear morphology was calculated considering the total number of cells. Data were normalized accordingly to the levels found in control cells. The diameter of the cells was measured by using LAS AF software (Leica Microsystems).
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2

Blocking Cytokine Response to Viral Infection

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To block the effects of the cytokine response to viral infection in canine cells, 100 ng of antibody against canine TNFα, IFNα, and IFNγ (KingFisher Biotec, St. Paul, MN, USA) was added alone and in combination to confluent cells infected with MYXV-red for one-hour at 0.1 moi in 48-well plates (Corning, Corning, NY, USA). The antibody against canine IFNβ was not available for purchase. MYXV-red infection in cells was monitored visually by screening for fluorescent red protein expression using a 560/40 nm bandpass excitation filter and a Leica DMI4000B inverted microscope. Virus titers were determined using a plaque assay at 72 hpi. The effect of cytokines on MYXV-red replication was calculated as a percentage of ffu/mL in treated cells relative to untreated cells (ffu/mL of treated cells ÷ ffu/mL of untreated cells). Four to eight data points were collected for each cell line tested. The data were analyzed using unpaired t-tests with Welch’s correction in GraphPad Prism version 9.1.0 software (San Diego, CA, USA).
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3

Osteoblast and Megakaryocyte Migration Assay

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Osteoblast migration assays were performed using Culture-Insert μ-Dishes as described by the manufacturer (Ibidi). Primary WT or Pyk2-KO osteoblasts were seeded into the inner well of the μ-Dish and incubated at 37°C and 5% CO2 overnight. Alternatively, prior to plating in migration chambers, primary osteoblasts were infected with adenovirus expression constructs for Pyk2 using multiplicity of infection (MOI) of 300 per virus for 3 days. The migration chamber inserts were removed, unattached cells were rinsed off, and osteoblasts were incubated with alpha-MEM containing 10% serum for 6 hours. The migration of cells into the clear zone outside of the plating area was quantified microscopically. For migration assays involving MKs, 1x105 osteoblasts were first plated into migration chambers and incubated overnight. The following day, chamber inserts were removed and osteoblasts were imaged before adding 1x104 MKs to each well. Osteoblasts plus MK co-cultures were then incubated for an additional 6 hr, after which the cells were fixed in 4% formaldehyde. Osteoblast migration distance was determined by microscopic imaging using a Leica DMI4000B inverted microscope with attached digital camera. Final analyses were performed using Image Pro software (Media Cybernetics, Bethesda, MD).
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4

Immunostaining for Mitochondrial Markers

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Cells were seeded onto 13 mm ø coverslips, and after treatment, were fixed in either 4% paraformaldehyde (PFA) for 15 min (for assessment of intracellular hypoxia by pimonidazole staining) or 100% ice-cold methanol overnight (for assessment of the mitochondrial distribution by COXIV or ATP5B). Notably, we found that COXIV and ATP5B total protein levels in cells were not significantly affected by either prolonged exposure to hypoxia (1% O2) or stable increased expression of CHCHD4 and as such, we deemed these mitochondrial proteins as suitable markers for immunostaining mitochondria in the experiments described in this study. For PFA fixed samples, cells were washed and permeabilized with a 0.5% Triton-X solution for 10 min, then washed with phosphate-buffered saline. Immunostaining was carried out using primary antibodies followed by fluorescently labeled secondary antibodies (anti-mouse Alexa 568 and anti-rabbit Alexa 488, Life Technologies) as well as DAPI. All cell imaging was carried out using a DMI4000 B inverted microscope (Leica).
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5

Glucose-Powered Microscale Biocatalysis

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GOx/DEAE-dextran (2.2 mg mL−1 GOx, 0.35 mg mL−1 DEAE-dextran) and ATP/pLL (10 mM ATP, 10 mM pLL) solutions were freshly prepared separately in Milli-Q water and mixed at 1 : 1 volume ratio. The pH was adjusted to ∼10.2 using NaOH and the solutions supplied with glucose (25 mM or 100 mM final concentration; total final volume of 20 μL), then 5 μL of the solution were rapidly loaded into a custom-made passivated capillary chamber that was hermetically sealed with UV-curing glue. The sample preparation took ca. 2 min after glucose addition. Optical microscopy images of the samples were then acquired every 10 s for 57 min on a Leica DMI 4000B inverted microscope equipped with a ×63 oil immersion lens (HCX PL APO, 1.4 NA) using the MicroManager software. Images were processed using ImageJ.
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6

Live-cell Microscopy of Treated Cells

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Cells were plated in glass-based black-walled multi-welled microscopy plates and allowed to adhere overnight. Following treatments (as described in figure legends), the plates were sealed with air-tight adhesive film and imaged on a heated stage, using a DMI4000 B inverted microscope (Leica).
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7

Caspase-1 Activity Assay in Aortic Tissue

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The fluorescent dye FLICA 660 Casp1 Assay (Catalogue# 9122, ImmunoChemistry Technologies, Bloomington, MN, USA) was used to determine caspase1 activity. Aortic rings were frozen in Tissue-Tek® OCT compound (Maumee, OH, USA) embedding medium, cut in histological sections (10 μm), fixed in acetone and incubated for 1 h protected from light at 37 °C, washed, mounted, visualized and analyzed with a Leica DMI 4000B inverted microscope (×40 objective). The images were processed using LAS AF software (Leica Microsystems) and analyzed by the ImageJ analysis software (NIH, Bethesda, MD, USA).
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8

Superoxide Anion Detection in Aortic Tissue

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The fluorescent dye DHE was used to determine superoxide anion (O2) production. Aortic rings were frozen in Tissue-Tek® OCT compound embedding medium, cut in histological sections (10 μm) and incubated for 10 min at 37 °C in Krebs Henseleit solution containing 5 μM DHE. Fluorescent intensity was captured with a Leica DMI 4000B inverted microscope (×40 objective). The images were processed using LAS AF software (Leica Microsystems) and analyzed by the ImageJ analysis software.
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9

In Vitro Angiogenesis Assay

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In 96-well plates, 60 µl of Matrigel (Catalog No. 356234, BD Biosciences, Bedford, MA) was placed in each well, which was then solidified at 37 °C for 30 min. Transfected HUVECs (2 × 104/well) were seeded into Matrigel-coated wells and cultured for 8 h. After that, the medium was discarded, and the cells were labeled with 2 µM of calcein AM fluorescent dye (Catalog No. ab141420, Abcam) at 37 °C for 20 min. A Leica DMI4000B inverted microscope was used to observe the capillary-like structures, and images were taken using a Leica DFC345FX camera. The number and area of the formed tubes, the number of junctions, and the total branching length were quantified using ImageJ software. Experiments were performed three times independently.
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10

Immunofluorescence Staining of Cells

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For IF staining of cells and tissues, the protocols used were identical to those used for IHC analysis. Following incubation with the primary antibody, the slides were subjected to serial incubation with goat anti-rabbit IgG/FITC at a concentration of 1:100 (Proteintech, Chicago, USA). Subsequently, the slides were imaged using an automated Leica DMI 4000 B inverted microscope equipped with a Leica DFC300 FX camera.
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