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69 protocols using clarus 680

1

Disinfection Byproducts Removal by MGO

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The DBPsFP of the four surface water samples before and after MGO adsorption treatment was analysed. All samples were adjusted to pH 7.0 ± 0.2 with 0.1 M HCl or NaOH. Then, approximately 45 mg∙L-1 NaOCl was added and the resulting solutions were incubated in dark at 20°C for 24 h. Sodium thiosulfate was used to neutralize residual chlorine. THMs, haloacetonitriles (HANs) and chloral hydrate (CH) were measured cording to our previous work [31 (link)]. HAAs were measured with EPA Method 552.3 by gas chromatograph with an electron capture detector (Clarus 680, PerkinElmer, USA).
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2

GC/MS Analysis of M. orbicularis Phytochemicals

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The phytochemical compounds of M. orbicularis fruit extracts were analyzed using GC/MS analysis. A Perkin Elmer Clarus 680 (Perkin Elmer, USA) system attached to a triple quadrupole mass spectrometer was used. Chromatography was conducted on a hydrophobic capillary column RTxi-5 Sil MS column (30 m × 0.25 mm ID × 0.25 µm) using an injection volume of 10 µL, a flow rate of 1.5 mL/min, a pressure of 23.1 KPa, and an average velocity of 0.2 sec. The temperatures of the source and the interface were 200 °C and 280 °C, respectively. The initial temperature was set at 80 °C for 2 min, increased to 250 °C at 15 °C/min, and raised to 280 °C at 15 °C/min (held for 12 min). Identification of phytochemicals in extracts was carried out by comparing the obtained retention indices with those of chemical compounds in the database of the National Institute of Standards and Technology (NIST).
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3

Fatty Acid Composition Analysis Protocol

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The analysis of FA composition was conducted according to established methodologies. Sample preparation adhered to the protocols outlined in the standard LST EN ISO 12966-2:2017 Part 2 [44 ], which delineates the procedures for methyl ester preparation of FAs. FA methyl esters were analyzed using a gas chromatograph GC-MS (PerkinElmer Clarus 680) coupled with a mass spectrometer PerkinElmer Clarus SQ8T. The chromatographic column temperature was initially set at 60 °C for 1 min, followed by a linear increase of 12 °C per minute until reaching 250 °C, where it was held for 10 min. The spectrometer temperature ramped up at a rate of 5 °C per minute to 300 °C, remaining constant for 20 min. The evaporator temperature was maintained at 250 °C. Calibration curves for this analysis were established using the standard Supelco 37 Component FAME Mix provided by Merck & Co., Inc. (Rahway, NJ, USA).
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4

Quantification of Egg Yolk Fatty Acids

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Capillary high-resolution gas chromatography (HR-GC) with a CP-Sil 88 CB column was used to analyze the fatty acids in all sample extracts. The GC column was installed on a PerkinElmer gas chromatograph CLARUS 680 equipped with a flame ionization detector and split injection, as previously described [53 (link)]. In brief, hydrogen was employed as the carrier gas at a flow rate of 1 mL × min−1 while the split ratio was 1:20, with the injector and detector adjusted at 260 °C and 280 °C, respectively. The GC oven temperature programme was 150 °C for 5 min; 2 °C/min heating until 200 °C and held for 10 min; and 1 °C/min heating until 225 °C and held for 20 min. To calibrate the reference standard mixture “Sigma FAME”, the methyl esters of C18:1cis-11, C22:5n-3, and C18:2cis-9, and trans-11, C22:4n-6, and C18:4n-3 were employed. After GC analysis of 5 samples, the 5-point calibration of single fatty acids assessed were ranged between 16 and 415 µg/mL. Fatty acid concentrations were displayed in milligrams per gram of egg yolk.
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5

Comprehensive Characterization of Synthesized Compounds

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FT-IR/NIR Spectroscopy Frontier (Perkin Elmer, Waltham, MA, USA) and Bruker AC 500 MHz (Bruker Co., Billerica, MA, USA) were used to analyze the chemical structure of synthesized products. To obtain the FT-IR spectra, samples (1–2 mg) were prepared by mixing them with dried KBr (100–200 mg) and then pressing the mixture into a pellet. The measurement acquired in range of 4000–500 cm−1 with a resolution of 4 cm−1. Gas chromatography (GC) (PerkinElmer Clarus 680) analysis of final product was carried out. Synthesized mPEG-G3.5 was dissolved in diethyl ether as solvent for GC run. TEM (JEM-1400, Tokyo, Japan) with an accelerating voltage of 100 kV was used to depict the size and morphology of the products. Sample at a concentration of 1 mg/mL was placed on a carbon-copper grid (300-mesh, Ted Pella Inc., Redding, CA, USA) and air-dried for 10 min before the measurement. Zeta potential and hydrodynamic diameter of the products were determined by Nano Particle Size SZ-100 (Horiba, Kyoto, Japan). Samples were prepared with deionized water at a concentration 1 mg/mL, filtered (pore size 0.45 μm), and sonicated for 5 min. Each sample was measured 3 times.
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6

Fatty Acid Profiling by GC-FID

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Ondividual fatty acids were determined by Gas Chromatography (Perkin Elmer Clarus 680) coupled with flame ionization detector, according to the method proposed by Souza et al. ( 2017) using a DB-FFAP capillary column (30 m × 0.32 mm i.d., 0.25 μm film thickness). The analysis parameters were: inlet temperature at 250 °C; detector temperature at 280 °C; column program temperature at 150 °C for 16 min., 2 °C.min -1 until 180 °C, maintaining that temperature for 25 minutes; then raising 5 °C.min -1 until 210 °C, maintaining this temperature for 25 minutes. Helium was used as carrier gas at 1.0 mL.min -1 rate. Nitrogen was used as make-up gas at 30 mL.min -1 rate. The flame gases were hydrogen (30 mL.min -1 ) and synthetic air (300 mL.min -1 ). The injections were made in triplicate in split (1:90) mode, and the injection volume was 1 μL. The FAMEs identification was performed by comparation of the retention time of the peaks presented by the samples and the retention time of standard mix (189-19, Sigma, EUA). For the fatty acids quantification, internal standard was added to the extracted FAMEs (C23:0 Sigma, EUA). The calculations were made following the Equation 1 and expressed in mg/g of total lipids. F AG = Conversion factor from FAME to fatty acid.
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7

GC-MS Analysis of EEC Compounds

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GC-MS24 (link),25 (link) is one of the commonly used instruments for identifying and separating organic molecules. It is a typical chemical analysis method for accurate quantitative and qualitative analysis. In this case, GC-MS was used to observe and compare the EEC after pure EEC and UV light. The experiments were performed using a PerkinElmer Clarus 680 gas chromatograph (GC) connected to a PerkinElmer Clarus 600T mass spectrometry (MS). The relative affinity of the stationary phases of the different molecules in the sample would promote the separation of the molecules. The column used in the GC experiment was Elite-624, which had a length and an inner diameter of 30.0 m × 0.25 mm and a film thickness of 1.4 μm. The molecular effluent of the column was captured, and the electron ionization (70 eV) fragment was detected using their mass to charge ratio. A helium flow rate of 1.0 mL/min was used as the carrier gas for the column.
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8

Liver and Skin Tissue Lipid and Oxidative Analyses

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The liver tissue was lysed in a methanol solution (1:10) with ultrasound and mixed with chloroform solution. After adding distilled water, the mixture was separated into two layers after centrifuging at 3000 rpm, at 4 °C, for 10 min. The upper layer containing the organic solvent was separated, and ethanol plus triton X mixture as emulsifiers (1:1 v/v) was added to the organic solvent part. The triglyceride contents in the emulsifier layer were measured using a triglyceride kit (Asan Pharmaceutical, Korea).
The liver or skin tissues were lysed in lysis buffer (1:10) with ultrasound. A mixture of cold 0.25N-HCl, 15% trichloroacetic acid, and 0.38% 2-thiobarbituric acid was added to the lysed liver tissue. The mixture was placed in a 100 °C incubator for two hours. After cooling, the supernatants were separated with centrifugation at 5000 rpm at 4 °C for 10 min, and their optical density was detected at 532 nm in a spectrophotometer (Perkin-Elmer, Boston, MA, USA). The contents of 2-thiobarbituric acid reactive substances (TBARs) were measured in the liver and skin tissue extract using TBARS assay kit (Abcam, Cambridge, UK).
The short-chain fatty acid (SCFA) contents of the serum from the portal vein were analyzed by gas chromatography (Clarus 680, PerkinElmer, Boston, MA, USA); 1 mM acetate, propionate, and butyrate (Sigma, St. Louise, MO, USA) were used as standards [62 (link)].
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9

GC-MS Analysis of Chemical Compounds

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A polar column (DB-WAX, 30 m 0.25 mm 0.25 m, Agilent Technology, Santa Clara, CA, USA) was used in a PerkinElmer GC–MS (GC, Clarus 680; MS, Model SQ8C) using helium as the carrier gas at a follow rate of 1 mL/min. The initial oven temperature was held at 35 °C for 5 min, then ramped up to 140 °C at 4 °C/min and kept for 5 min, before being elevated to 230 °C at 10 °C/min and kept for 5 min. An MS detector was used with a mass scan range of 33–450 amu (m/z) and a 70 eV electron ionization (EI) voltage. Both the ion source and line transfer were adjusted at 250 °C.
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10

Quantifying Fatty Acid Profiles

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The contents of AA, PA, IBA, BA, IVA, and VA were determined by GC-FID (Clarus® 680, PerkinElmer, United States). Detailed experimental steps are provided in Supplementary Method S2.
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