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3 protocols using rbc lysis buffer 10

1

Isolation of Liver Leukocytes

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The peritoneal cavity was opened to expose the liver, and 5 to 10 ml of 1× PBS were injected into the hepatic portal vein using a 27G needle to perfuse the liver. The gall bladder was then removed, and all lobes of the liver were collected and mashed through a 70-μm filter sitting in a 50-ml tube using a syringe plunger. The filter was rinsed with 1× PBS/2% FCS/5 mM EDTA three to four times during the mashing procedure. The cell suspension was centrifuged at 300g for 5 min at 4°C and then supernatant-aspirated, and the cell pellet washed with 10 ml of 1× PBS/2% FCS/5 mM EDTA. Following centrifugation and aspiration of the supernatant, the pellet was resuspended in 25 ml of isotonic Percoll [8.44 ml of Percoll (Healthcare Biosciences, Uppsala, Sweden; catalog no. 17-0891-01)/0.47 ml of 20× PBS/16.09 ml of 1× PBS] at room temperature (RT). Liver cell suspensions were centrifuged at 693g for 12 min at RT with no brake; the leukocyte pellet at the bottom of the tube was then washed with 10 ml of 1× PBS/2% FCS/5 mM EDTA and RBC-lysed (RBC lysis buffer 10×, BioLegend, catalog no. 420301). Following washing with 1× PBS/2% FCS/5 mM EDTA, the pellet was resuspended in 2.4G2 blocking solution before flow cytometry staining.
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2

Isolation and Culture of Immune Cells

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RPMI-1640 medium (product no. 30-2001), fetal bovine serum (product no. 30-2020), dimethylsulfoxide (product no. 4-X), and penicillin/streptomycin (100 U/mL) (product no. 30-2300) were purchased from the American Type Culture Collection (ATCC) (Manassas, VA, USA). Hemopexin (Hx) (heme scavenger; product no. 16-16-080513) was obtained from Athens Research and Technology (Athens, GA). Hemin (ferric chloride heme; product no. H9039), phenylhydrazine hydrochloride (PHZ) (for induction of hemolytic anemia; product no. 114715), phorbol-12-myristate-13 acetate (PMA) (product no. P8139), Tak-242 (product no. 614316), IL-13 (product no. SRP3274), LPS (product no. L4391), IFN-ϒ (product no. SRP3058), IL-4 (product no. SRP3093), DNase I (product no. 10104159001), Collagenase D (product no. 11088866001), and Dispase II (product no. D4693) were obtained from Sigma-Aldrich (St. Louis, MO, USA). RBC Lysis Buffer (10×) (product no. 420302) and Cell Staining Buffer (product no. 420201) were obtained from BioLegend (San Diego, CA, USA).
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3

Blood Sample Isolation and RNA Extraction

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We placed 5 mL of blood in anticoagulant, ethylene–diamine–tetra–acetic acid (EDTA) blood tubes. We treated 4 mL blood samples with red blood cell (RBC) lysis buffer (10×) (BioLegend, San Diego, CA, USA) and let them stand for 20 min on ice. Following centrifugation at 326× g for 5 min at room temperature, we discarded the supernatants and resuspended the isolated cells in 8 mL of 1% Bovine Serum Albumin (BSA)/ Phosphate-Buffered Saline (PBS). We ran the samples through Celsee and collected the cells on the chip in 1 mL × 8 back flushes using 1% BSA/PBS, and centrifuged them at 326× g for 5 min. We used an RNA isolation NucleoSpin kit (MACHEREY-NAGEL, Düren, Germany), according to the manufacturer’s protocol.
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