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4 protocols using e coli bl21

1

Bacterial Expression System for Viral Proteins

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Escherichia coli TOP10 (Thermo Fisher Scientific, Waltham, MA, USA) was generally used to clone genes. E. coli BL21 (Qiagen, Hilden, Germany) and M15 (Qiagen) strains were used to prepare the purified antigen for each viral capsid protein. S. cerevisiae 2805 (MATa pep4::HIS3 prb1-Δcan1 GAL2 his3 ura3-52) was the yeast strain used for heterologous expression. Yeast and bacterial strains were cultured, as previously described (So et al. 2021 (link)).
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2

Recombinant SCF Expression in E. coli

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The PQE60 plasmid and E.Coli BL 21 were obtained from QIAGEN (Valencia, CA, USA). Isopropyl-1-thio-ß- D-galactopyranoside (IPTG) was from Bio-Basic Inc (Amherst, NY, USA) to induce recombinant SCF expression in bacteria. Guanidine Hydrochloride was from Amresco Inc (Solon, OH, USA). Urea was from Shanghai Experimental Reagent Inc (Shanghai, China). RPMI 1640 medium and STEM PRO®-34 SFM medium were from Gibco (Grand Island, NY, USA). Fetal bovine serum was from Hyclone (Logan, UT, USA). Goat-anti-mouse immunoglobulin G (IgG) conjugated with alkaline phosphatase was from Biolegend (Canada). Prestained protein molecular weight marker was from Bio-Rad (USA). Biotin conjugated goat anti-mouse-IgG was from Biolegend (San Diego, CA, USA). Mouse monoclonal antibody isotyping reagent kit and streptavidin-peroxidase was from Sigma-Aldrich (St. Louis, MO, USA). MACS immunomagnetic absorption column separation device and CD34 MicroBead Kit, was from Miltenyi Biotec (Germany). rhTPO and rhFLT-3 were from Pepro Tech (USA). Anti-human CD34 mAb conjugated with phycoerythrin was from Immunotec (Canada). Peptides were synthesized by Nanjing Genscript Inc. (Nanjing, China).
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3

Recombinant EspA, EspB, and Intimin-β Proteins

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The full nucleotide coding regions of EspA and EspB were amplified using the sets of primers pQE60-EspA and pQE60-EspB, respectively (see Key Resources Table), and then cloned into the plasmid pQE60 (QIAGEN). The plasmid p6his-Intb385 containing the DNA region encoding the extracellular C-terminal 385 amino acids of Intimin-β (6xHis-tagged-Intimin-β385) cloned into the vector pQE32 was kindly provided by Alison D. O’Brien (Sinclair and O’Brien, 2004 (link)). The recombinant plasmids were transformed into E. coli BL21 containing the plasmid pREP4 (QIAGEN) and protein overexpression was induced by adding 1mM isopropyl β-D-1-thiogalactopyranoside (IPTG; Sigma-Aldrich) into the bacterial cultures. Recombinant proteins were purified under denaturing conditions using nickel nitrilotriacetic acid (Ni-NTA) agarose (QIAGEN), and then dialyzed in PBS 1X. Protein concentration was determined using the Quick Start Bradford Protein Assay (Bio-Rad) and the purity of the samples was analyzed by electrophoresis into 12% SDS-PAGE. Aliquots of the proteins were stored at −20°C until use.
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4

High-Throughput SIRT1 Activity Assay

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The prokaryotic expression vector of truncated SIRT1(193-747AA) was constructed with SIRT1 cDNA from Prof Hou-Zao Chen (Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College). Then the SIRT1 recombinant was induced and purified in E.Coli Bl21(DE3) and Ni-NTA(Qiagen). The peptide substrate used in the screening model was synthesized according to p53 sequence; it was comprised of ε-acetylated lysine and a conjoined 4-methyl-7-amide-coumarin moiety (AMC) at the carboxyl terminus of the RHKK sequence. The screening method contains two enzymatic catalysis reactions. Firstly, the peptide substrate is incubated with human recombinant SIRT1 along with its cofactor NAD+. Once the acetyl group is released form the peptide, the substrate can be recognized by trypsin in the second step, following by the release of the AMC fluorescence moiety. Finally, the free fluorophore can be detected using an excitation wavelength of 360nm and an emission wavelength of 460 nm. The reactions were suited to high-throughput screening, and the assay was performed in the 96-well microplate [28] [29] [30] .
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