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17 protocols using pd l1 apc

1

Modulation of Immune Cell Responses

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Whole blood, PBMCs, or PMNs were cultured with human interferon-α (IFNα) (1,000 U/ml, Alpha A/D hybrid, #11200, PBL Interferon Source; Piscataway, NJ), R848 (5 µg/ml, InvivoGen, San Diego, CA), AT-2 HIV-1MN (3–1,500 ng/ml p24 capsid equivalent), control microvesicles, or lipopolysaccharide (LPS) (100 ng/ml, Escherichia coli 0111:B4; Sigma). Cells were then blocked in PBS with 10% human serum for 20 min at 4°C, resuspended in 100 µl of master mix containing staining buffer (PBS with 2% FBS) and antibodies: CD15-FITC (Biolegend), CD14- PerCP-Cy5.5, and PD-L1-APC (Biolegend). Media for experiments using AT-2MN was supplemented with FBS instead of human serum to avoid potential blocking effects of human serum [54] (link). Blocking of human IFNα was performed by pre-incubating PBMCs or PMNs with 5 µg/ml anti-IFNAR (clone MMHAR-2; Invitrogen) for 30 min before addition of AT-2 HIV or R848.
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2

Flow Cytometry Analysis of PD-L1 and B2M

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Surface and intracellular flow cytometry analyses were performed as described60 (link). Cells were harvested, washed and cells immediately labelled with the indicated antibodies in a final volume of 50 μl for 10 min on ice. Cells were washed twice, resuspended in 100 μl of PBS, and analysed immediately. The following fluorochrome‐conjugated antibodies were used at 1:50 dilutions: PD-L1-APC (BioLegend, clone 29E.2.A3, ref. 329708) or B2M-FITC (BioLegend, clone 2M2, ref. 316304).
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3

Comprehensive Immune Cell Profiling

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The following pre-conjugated antibodies were used for flow cytometry: CD56-PE (clone 5.1H11), CD56-PC7 (clone 5.1H11), CD56-PacBlue (clone 5.1H11), CD3-FITC (clone OKT3), CD16-BV786 (clone 3G8), CD57-PE (clone HCD57), CD3-APC (clone OKT3), CD3-PacBlue (clone UCHT1), CD25-PE (clone PC61.5), PD-L1-APC (clone 29E.2A3), CD8-PC7(clone RPA-T8), IFNγ-Alexa647(clone 4S.B3), TNFα-PacBlue(clone Mab11) (BioLegend); CD45-APC(clone 2D1), CD45-eFluor450(clone 2D1), PD-1-eVolve655 (clone J105), FoxP3-FITC (clone PCH101), TNFα-eF450 (clone Mab11) (eBioscience); and CD4-APC-H7 (clone RPA-T4) (BD Biosciences). All samples were acquired on a CytoFlex flow cytometer and analyzed using CyteExpert or FlowJo software (v10.0.7).
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4

Multiparametric T cell analysis

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T cells were re-stimulated with phorbol myristate acetate (Sigma, 50 ng/mL) and ionomycin (Sigma, 500 ng/mL). 90 minutes later, cells were treated with Brefeldin A to block cytokine secretion. 3 h later, cells were stained for surface markers and simultaneously labelled with Live/Dead Blue Viability Dye (Thermo Fisher) for 20 minutes at 4°C. Cells were washed twice and fixed overnight using a FoxP3 Fixation/Permeabilization kit (Thermo Fisher). The following day, cells were washed and stained for intracellular cytokines at room temperature for 1 h. They were then washed 3 times and analysed using an LSR Fortessa machine (Beckman Dickinson). Analysis of mean fluorescence intensity was performed using FlowJo v10.0. All experiments were performed at least two independent times. Antibodies used (at 1:100 unless otherwise noted) were TNF-PE (BioLegend, MP6-XT22, 506306), PD-1-PECy7 (BioLegend, RMP1–30, 109110) IFN-γ-FITC (BioLegend, XMG1.2, 505806), CD4-BV711 (BioLegend, RM4–5, 100550), CD8α-BV786 (BioLegend, 53–6.7, 100750), Tox-PE (Miltenyi, REA473, 130–120-716, 1:50), Tcf7-Alexa647 (Cell Signaling, C63D9, 6709), PD-L1-APC (BioLegend, 10F.9G2, 124312, 1:5000), LAG-3-PerCP-Cy5.5 (BioLegend, C9B7W, 125211), TIM-3-PE-Dazzle594 (BioLegend, B8.2C12, 134013).
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5

Multiparameter Flow Cytometry Analysis

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Samples were run on an Attune NxT Acoustic Focusing Cytometer (Life Technologies). Analysis was performed in FlowJo. Gating was first done on forward scatter and side scatter to exclude debris. Doublets were excluded by gating on FSC area versus FSC height (Supplementary Fig. S8) Zombie Violet (BioLegend) was used to exclude dead cells from analyses. Antibodies: CD3-AF488 (BioLegend, clone HIT3a), Cd8a-AF488 (BioLegend, clone 53*6.7), CD45-PerCP/Cy5.5 (BioLegend, clone GK1.5), CD45-APC (BioLegend, clone 30-F11), NK1.1-APC (BioLegend, clone PK136), NKp46- APC (BioLegend, clone 29A1.4), CD11b- PE/Cy7 (BioLegend, clone M1/70), CD11c-AF488 (BioLegend, N418), IA/IE-AF700 (BioLegend M5/114.15.2), CD27 (BioLegend, clone LG.3A10), H-2- PE (BioLegend, clone M1/42), NKG2A-PE (Miltenyi Biotec, clone REA1161), H2-Dd-PE (BioLegend, clone 34-2-12), Qa-1b(b)-PE (BD Biosciences, clone 6A8.6F10.1A6), PD-L1–APC (BioLegend, clone 29E.2A3), CD49b-APC/Cy7 (BioLegend, clone DX5), and CD107b-FITC (BioLegend, clone 1D4B), IFNγ-PE (BioLegend, clone XMG1.2).
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6

Neutrophil-like HL-60 Cell Immunophenotyping

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For the expression of CD-11 b, neutrophi-like HL-60 cells were collected from cultures, washed twice with PBS, and then incubated with APC-conjugated anti-human CD-11 b or APC-conjugated IgG1 isotype control antibody for 30 min on ice. Cells collected from peritoneal cavity were washed and incubated with anti-mouse mAbs Gr-1-FITC, F4/80-PE and PD-L1-APC (all from biolegend) for 30 min at 4 °C as described previously [15 (link)]. Data were acquired on CytoFLEX S (Beckman Coulter) and analyzed with Flowjo software (TreeStar, Ashland, OR, USA).
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7

PD-L1 and Apoptosis Assay in C1498 Cells

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For in vitro experiments assessing PD-L1, C1498FFDsR cells were washed with PBS then surface labeled with PD-L1-APC (BioLegend). Apoptosis was assessed in vitro with C1498 cells employing the FITC Annexin V apoptosis kit (BioLegend). Antibodies utilized for in vivo analyses were obtained from BioLegend, BD Horizon, and Thermo Fisher. For both in vitro and in vivo experiments, events were then collected using the FACS LSRII (BD Bioscience), and were gated on 15,000 events. FlowJo v10 was utilized to perform data analysis.
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8

T-Cell Activation and PD-1/PD-L1 Expression Analysis

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Flow cytometry was performed with a MACSQuant 10 flow cytometer (Miltenyi Biotec, Bergisch Gladbach, Germany) and data was analyzed using the FlowJo software version 10.0 (FlowJo, LLC, Ashland, OR, USA). Antibody titrations and compensation was performed in beforehand. To measure T-cell activation, PD1/PD-L1 expression, and T-cell platelet aggregate formation, the following antibodies were used: CD4-PE-Cy7, CD8-BV-510, PD1-PE, PD-L1-APC, CD41-FITC (all from Biolegend, San Diego, CA, USA). T-cell Proliferation was assessed by the decreasing fluorescence intensity of the proliferation-dye. Human TruStrain FcX (BioLegend) was added before staining to avoid unspecific binding of the antibodies. Gating strategy of CD4 and CD8 positive T lymphocytes, as well as PD-1 and PD-L1 positives and proliferated cells, are shown in Figure 1.
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9

Isolation and Characterization of Mouse NK Cells

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Mouse NK cells were isolated from single-cell suspensions of the dissociated spleens of 6- to 8-week-old C57BL/6 mice using the NK Cell Isolation Kit II according to the manufacturer's instructions (Miltenyi Biotec). In this protocol, T cells, dendritic cells, B cells, granulocytes, macrophages, and erythroid cells are indirectly magnetically labeled with a cocktail of biotin-conjugated antibodies and anti-biotin microbeads for 15 minutes. After depleting magnetically labeled cells, isolation and enrichment of unlabeled NK cells was confirmed by flow cytometry. Isolated NK cells were stained with CD3-FITC (catalog no. 100306; BioLegend), NK1.1-PE (catalog no. 108708; BioLegend), PD-1-Pe/Cy7 (catalog no. 109109; BioLegend), PD-L1-APC (catalog no. 124311; BioLegend) to distinguish enriched NK cells from CD3+ cells. Blood was taken either serially in an approximately 200 μL submandibular vein bleed or from cardiac puncture at the time of sacrifice. Blood was collected in heparinized tubes, washed twice with ACK lysis buffer, and resuspended in PBS for staining.
Flow cytometry analysis was carried out by the Mayo Microscopy and Cell Analysis core, and data were analyzed using FlowJo software. Enriched NK cells were identified by gating on NK1.1hi CD49bhi CD3εlo cells.
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10

Evaluating NK Cell Cytotoxicity and Checkpoint Blockade

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B16 or B16MRD tumor cells cocultured with isolated NK cells were seeded in DMEM containing 10% FBS and 1% penicillin/streptomycin containing anti–PD-1 (catalog no. BE0146; Bio X Cell), anti–PD-L1 (catalog no. BE0101; Bio X Cell), anti-CTLA4 (100 ng/mL; catalog no. BE0164; Bio X Cell), or isotype control (Chrome Pure anti-rabbit IgG; catalog no. 011-000-003; The Jackson Laboratory). Seventy-two hours postincubation, supernatants were harvested and analyzed for cytokine secretion using ELISAs for IFNγ and TFNα. Tumor cells were stained for CD45-PerCP (BD Bioscience) and PD-L1-APC (BioLegend). Flow cytometry analysis was performed as discussed.
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