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6 protocols using mical1

1

Protein Extraction and Western Blot Analysis

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Protein extraction from the sample and concentration determination of whole cells was performed as previously described (Duan et al., 2016 (link)). Briefly, the cells were lyzed in RIPA buffer containing phenylmethanesulfonyl fluoride (PMSF) and protease inhibitor cocktail. Equal amounts of proteins were resolved on SDS polyacrylamide gels and transferred to nitrocellulose membrane. The resulting blots were blocked with 5% non-fat dry milk and probed with antibodies. The following antibodies were used: GAPDH (KangChen, Shanghai, China), β-actin (Santa Cruz, Santa Cruz, CA, United States), MICAL1 (proteintech, Hubei, China), NEDD9 (Santa Cruz), FLAG (Abways, Shanghai, China), Rac1 (BD, Franklin Lakes, NJ, United States), RhoA, Cdc42, and HA antibodies (Cell Signaling, Danvers, MA, United States). Protein bands were detected by incubating with HRP-conjugated antibodies (Santa Cruz) and developed using ECL reagent (Millipore). Digital images of the positive bands were obtained and analyzed with Quantity One (Bio-Rad, Hercules, CA, United States).
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2

Immunohistochemical Evaluation of MICAL1 in Renal Cancer

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Renal cancer tissue microarrays were purchased from Outdo biotech (Shanghai, China). Immunohistochemical staining was performed as described previously [27 (link)]. Briefly, microarray tissues were dewaxed and incubated MICAL1 (Proteintech, Wuhan, China) and secondary antibody (Maxim Biotechnologies, Fuzhou, China) overnight at 4 °C. Following incubation with HRP-labelled secondary antibody, tissue sections were stained with DAB under microscopic observation and counterstained with hematoxylin. Typical images were captured under Olympus BX51 microscope. By evaluating the percentage of the number of stained cells and the staining intensity of MICAL1, the immunoreactivity score (IRS) was evaluated as described previously [28 (link)–30 (link)]. IRS was calculated as intensity of the staining reaction (0 to 3 points) multiplied by the percentage of positive cells (0 to 4 points).
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3

Coimmunoprecipitation Assay Protocol

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Coimmunoprecipitation assays were performed as previously described. Briefly, cell lysates were incubated with antibody at 4 °C overnight. Antibody-bound complexes were precipitated with protein A + G agarose beads (Beyotime) and eluted by rinsing buffer, then the agarose-associated protein complexes were dissolved in SDS loading buffer and analyzed by immunoblotting assays.
Sample protein extraction and concentration determination of whole cells were performed as previously described [9 (link)]. Briefly, equal amounts of protein were run on SDS polyacrylamide gels and transferred to nitrocellulose membrane. The resulting blots were blocked with 5 % non-fat dry milk and probed with antibodies. The following antibodies were used: GAPDH (KangChen), MICAL1 (proteintech) (Santa Cruz Biotechnology), RAB35 (BD Biosciences) (ABclonal Technology), Akt, P-Akt, HA and GFP antibodies (Cell Signaling). Protein bands were detected by incubating with HRP-conjugated secondary antibodies (Santa Cruz Biotechnology) and visualized with ECL reagent (Millipore).
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4

Immunohistological Analysis of MICAL1 and NEDD9 in Gastric Tumor

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Tumor specimens were obtained from Outdo biotech (Shanghai, China). Thirty primary human gastric tumor samples and their corresponding paracancerous tissue samples were used for immunohistological staining in our study. The sections were deparaffinized and rehydrated. Peroxidase blocking was done with 3% H2O2 in methanol for 15 min at 37°C. Antigen retrieval was performed by transferring the sections into EDTA buffer (pH 8.0). The sections were then blocked by goat serum and applied with MICAL1 (proteintech, Hubei, China) or NEDD9 (absin, Shanghai, China) antibody at 4°C overnight. Next, the sections were treated with the secondary antibody (MXB, Fujian, China) for 1 h at room temperature. After counterstaining with hematoxylin, the slides were mounted and photographs were obtained using an Olympus BX51 microscope. Reagents for immunohistochemistry were all obtained from ZSGB-BIO (Beijing, China). The Immuno Reactive Score (IRS) was calculated as intensity of the staining reaction multiplied by the percentage of the number of positive cells as previously described(Dumitru et al., 2013 (link); Medale-Giamarchi et al., 2013 (link)).
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5

Kidney Protein Analysis by Immunoblotting

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Equal amounts of protein from four or more kidney lysates per experimental condition were pooled and resolved by SDS-PAGE. Using a standard technique, immunoblotting was performed with the following primary antibodies: WT1, podocin, nephrin, laminin, sema3a (sc-28867; Santa Cruz), β3-integrin (sc-14009; Santa Cruz), β1-integrin (AB1952; EMD Millipore), neuropilin1 (17 (link)), matrix metalloproteinase (MMP)-2 (MAB13434; EMD Millipore), MMP-9 (AB19016; EMD Millipore), plexinA1 (sc-25639; Santa Cruz), VEGF receptor 2 (2479; Cell Signaling Technologies), and MICAL1 (14818–1-AP; Proteintech). Actin (A2066; Sigma) or tubulin (Sigma) was used as a loading control. Signals were detected with appropriate horseradish peroxidase–conjugated secondary antibodies, visualized by chemiluminescence, and quantified using ImageJ software.
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6

Western Blot Analysis of Cellular Proteins

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Subconfluent cells were washed with PBS and lysed for 20 minutes on ice in a RIPA buffer containing 1% protease inhibitor cocktail (Beyotime). The protein was collected, and its concentration was determined by the BCA protein assay reagent kit (Thermo Fisher Scientific) then separated by SDS‐PAGE and transferred to nitrocellulose membrane. The membrane was then blocked with 5% non‐fat milk for 1 hour at room temperature and incubated with primary antibody overnight at 4°C. The following antibodies were used: GAPDH (Bioworld), MICAL1 (Proteintech) (Santa Cruz), NF‐kB (Santa Cruz), β‐catenin, p‐β‐catenin, p‐GSK‐3β, p‐S6K, histone‐H3, ERK, p‐ERK, Akt and p‐Akt (Cell Signaling), cyclin D (ABclonal), c‐myc, CDK (2, 4, 6) and cyclin (A, E) (Santa Cruz). The membranes were incubated with secondary HRP‐conjugated antibodies (Santa Cruz) and visualized with ECL reagent (Millipore). Digital images of immunoblots were obtained with a Chemidoc XRS and analysed using the image analysis program Quantity One (Bio‐Rad).
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