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13 protocols using reversed phase hplc

1

Quantifying Antioxidants and Oxidative Damage

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L-histidine (HIS) and Na-Acetyl-L-histidine (NAH) concentrations in individual lenses were determined by reversed-phase HPLC (Waters Corporation, Milford, MA, USA) [45 (link)], as modified by Breck et al. [46 (link)]. Supernatants for total (GSH) and oxidized (GSSG) glutathione were prepared from samples using a commercial kit (Prod. No. GT40, Oxford Biomedical Research, Oxford, UK) before being analyzed at 405 nm in a microplate reader (iEMS Reader Ms; Labsystems, Finland) [25 (link)]. Vitamin C was analyzed by HPLC as described previously [47 (link)] and tocopherols according to the CEN method [48 (link)]. Malondialdehyde (MDA) of liver and muscle were analyzed according to the method of Hamre et al. [6 (link)].
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2

Reversed Phase HPLC Analysis of Chiral Furfuryl Alcohols

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The reaction mixtures were analyzed on a Zorbax Eclipse XDB-C18 column (4.6 mm × 250 mm, 5 μm, Agilent, USA) using a reversed phase HPLC (Waters, USA) equipped with a Waters 1525 pump and a 2489 UV detector. The mixture of acetonitrile/0.4% (NH4)2SO4 solution with pH 3.5 (20/80, v/v) was used as the mobile phase with the flow rate of 0.6 mL/min. The retention times of 3A5AF (228 nm) and 3A5HEF (210 nm) were 9.8 min and 6.7 min, respectively. In addition, the product ee values were determined by HPLC analysis using an OJ-H Chiral column (4.6  ×  250 mm; Daicel Co., Japan). The mobile phase is n-hexane/isopropanol (84/16, v/v) with a flow rate of 0.7 mL/min. The retention times of (R)-3A5HEF and (S)-3A5HEF were 19.4 and 17.8 min, respectively. The specific rotation values of chiral furfuryl alcohols (Additional file 1: Table S1) were determined via an automatic polarimeter P810 (Hanon Instruments, Inc., China). To assay specific rotation values of 3A5HEF at 589 nm and 25 °C in ethanol, a concentration of 17.9 mg/mL was used. Absolute configurations of the products were based on comparison of their specific optical rotations with those in the literature.
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3

Reversed-phase HPLC Separation Protocol

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The reaction products were separated by reversed-phase HPLC (Waters; Milford, MA) with a diphenyl column (Grace, Vydac # 219TP54). Separations were performed isocratically with a mobile phase of 90 % water with 0.1 % formic acid and 10 % acetonitrile and a flow rate of 1.0 mL/min. UV detection was performed at 220 nm and 280 nm.
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4

Reversed-Phase HPLC Purification Protocol

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A ten-μL above aliquot was injected into a reversed-phase HPLC (Waters, Milford, MA, USA). The column was eluted by 30% ethanol and linearly increased to 100% at a flow rate of one mL/min. The peaks were detected at 360 nm. According to the peak time, each individual identifiable peak was collected via a detector. The collected fraction was dried and resolved in 20 μL of ethanol.
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5

Cinnamon Oil Effects on Fungal Metabolism

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Fresh spores were cultured in PDB medium (1.0 × 107 spores mL−1) containing 0 or 0.25 mg L−1 cinnamon oil for 6, 12, and 18 h at 25 °C under 200 rpm shaking condition. The spores and mycelia were collected by centrifugation, and the carbohydrate content of the supernatant was measured utilizing a portable refractometer (LB20T, Suwei, Taiwan, China). The total carbohydrate content of spores and mycelia was determined by a Total Carbohydrate Content Assay kit (BC2710, Solarbio, Beijing, China). The ATP content was measured by an ATP Content Assay Kit (BC0300, Solarbio, Beijing, China) in strict accordance with the product manual.
Fresh spores were cultured in PDB medium (1.0 × 107 spores mL−1) containing 0 or 0.25 mg L−1 cinnamon oil for 2, 4, and 6 days at 25 °C under static condition. After centrifugation, the supernatant was filtered through a 0.22 μm syringe filter (NO. F513152, Sangon, Shanghai, China). Patulin content was evaluated by a reversed-phase HPLC (high-performance liquid chromatography) with UV detection (Waters, Milford, MA, USA). A Waters XTerra RP18 column was used with mobile phases (95% water and 5% acetonitrile). The operational parameters were descripted as Zhou et al. [33 (link)].
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6

TAMRA-Labeled Peptide Substrate Synthesis

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Briefly, the fluorescently labelled peptide substrate was chemically synthesized on Rink amide resin using fluorenylmethoxycarbonyl (Fmoc) solid phase peptide synthesis (SPPS) on an Activotec P11 synthesizer (Activotec, Cambridge, U.K.). The peptide TAMRA-(GRGA)4 consists of four repeats of the arginine-containing tetrapeptide Gly-Arg-Gly-Ala and was N-terminally coupled to the fluorescent group 5(6)-carboxytetramethylrhodamine (TAMRA). After SPPS, the 2,2,4,6,7-pentamethyldihydrobenzofuran-5-sulfonyl (Pbf) side chain protection group on the arginines was chemically removed in a mixture containing 88.9% (v/v) trifluoroacetic acid (TFA, Biosolve, Valkenswaard, The Netherlands), 4.4% (v/v) thioanisole (Arcos Organics, Geel, Belgium), 2.2% (v/v) 1,2-ethanedithiol (Merck, Darmstadt, Germany), and 66.7 mg/mL crystalline phenol (Merck). The peptide was precipitated in 90% (v/v) cold methyl tert-butyl ether and purified through reversed-phase HPLC (Waters Corporation, Milford, MS), on a 250x8.0-mm PepMap C18 column (VDS Optilab, Berlin, Germany). Elution was performed in an increasing acetonitrile gradient in 0.1% (v/v) TFA. Peptides were detected and their relative molecular mass (Mr) confirmed via electrospray ion trap mass spectrometry (AmaZon SL, Bruker, Bremen, Germany). The purified peptides were lyophilized (Speedvac) overnight and stored at -20°C until use.
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7

Quantification of Tryptophan and Serotonin

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For each sample, 100 mg leaf tissue was ground with liquid nitrogen into a powder and soaked in 2 ml 100% methanol. The homogenates were centrifuged at 10,000 × g for 10 min and the supernatant was filtered through a syringe with a 0.2 μm cellulose acetate membrane filter (Pall, USA). Then the filtrate was evaporated to dryness under vacuum and dissolved in 500 μl 50% methanol. The final sample was analyzed by reversed-phase HPLC (Waters, USA) so that the tryptophan and serotonin contents could be quantified. The samples were separated on an XTerra RP C18 column (250 × 4.6 mm, 5 μm, Waters) with an isocratic elution of 50% methanol in water containing 0.3% trifluoroacetic acid at a flow rate of 0.4 ml/min. A UV wavelength of 280 nm was used for detection. The standard samples for tryptophan and serotonin were made by Sigma (USA).
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8

Solid-Phase Peptide Synthesis Protocol

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All linear peptides were synthesized using solid phase peptide synthesis (SPPS) and Fmoc chemistry. Peptides were synthesized using Fmoc-PAL-PEG-PS on a 0.2 mmol scale, and a 4-fold excess of the Fmoc protected amino acids in the presence of HOBt and TBTU as the activating agents were used for SPPS. Final deprotection of Fmoc from the last amino acid was achieved by washing the peptidic resin beads five times with DMF and six times with DCM, followed by drying under vacuum for 6 hours. Peptide was cleaved from the resin using a cocktail consisting of 94% TFA/2.5% liquid phenol/2.5% water/1% TIPS. After washing, cold diethyl ether was added to the mixture to precipitate the peptide, and the mixture centrifuged and lyophilized. Peptides were purified using reversed-phase HPLC (Waters, MA USA). Analytical HPLC was carried out using a XBridge, 4.6 mm × 250 mm (Waters, MA, USA) column with a stepwise gradient. The purity of the peptides was determined by HPLC. A general procedure for the synthesis of peptides is provided in Scheme 1.
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9

Quantifying DsbA Isomerase Activities

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F. tularensis LVS and SchuS4 DsbA isomerase activities were quantitated by measuring the rate of scrambled hirudin refolding, essentially as previously described (Hiniker et al., 2007 (link)). LVS and SchuS4 DsbA were reduced by incubation with 20 mM dithiothreitol (DTT) for 2 h at 4 °C, the reactions were desalted on NAP-5 columns (GE Healthcare), and protein fractions were collected. DsbA concentrations were determined by absorbance at 280 nm using extinction coefficients of 17,880 cm−1M−1. Scrambled hirudin (BoTai Bio-Tech, Dalian, Liaoning, China) was diluted to 24 µM in refolding buffer (100 mM sodium phosphate, 1 mM EDTA, pH 7.0) and incubated with or without 24 µM DsbA (LVS or SchuS4) in refolding buffer. Following incubation for 1, 2, 10, 22, or 30 min at room temperature, reactions were quenched by the addition of 10% (vol vol−1) formic acid. Reaction products were separated by reversed-phase HPLC (Waters) on a Vydac 218TP54 C18 column (W.R. Grace) at 55 °C using an acetonitrile gradient (19 to 25%, 30 ml) in 0.1% (vol vol−1) trifluoroacetic acid, eluted proteins were detected by absorbance at 220 nm, and data analyzed by Empower 2 software (Waters).
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10

Labeling of PD-L1 Inhibitors with Radioisotopes

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DOTA-PD-L1-i or HEHA-PD-L1-i (1 mg) was dissolved in 50 µL of ethanol, adjusting to a final volume of 1 mL with 1 M acetate buffer, pH 5.0 to 20 µL of the PD-L1-i conjugates, 80 µL of 177LuCl3 (370 MBq in 0.01M HCl) or 225AcCl3 (370 kBq in 0.01M HCl) were added. Finally, the mixture was incubated at 95 °C for 60 min. After labeling, 225Ac-HEHA-PD-L1-I was purified using solid-phase extraction (Speak C18 cartridge, Waters). Radioactive solutions were diluted in injectable-grade water (1 mL) for further use. For comparative purposes, Lu-DOTA-PD-L1-i was also prepared under the same conditions using stable LuCl3 (anhydrous powder; 99.99% trace metal basis; Sigma-Aldrich: Saint Louis, MO, USA) followed by HPLC purification.
The radiochemical purity of the radioconjugates was determined by reversed-phase HPLC (Waters) with radiometric and UV-vis detectors. The analysis was carried out with a Discovery C18 column (particle size: 5 µm, length: 25 cm, diameter: 4.6 mm). A linear gradient (rate flow: 1 mL/min) of CH3CN-0.1% TFA (B)/H2O-0.1%TFA (A), from 100% to 10% of A in 30 min, was used. For 225Ac-HEHA-PD-L1-i, fractions of 1.0 mL were collected, and the activity was evaluated in a NaI(Tl) detector (Auto In-v-tron 4010; NML Inc., Houston, TX, USA).
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