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13 protocols using bubr1

1

Mitotic Spindle Checkpoint Protein Detection

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The following antibodies were used at the indicated dilutions. CDC20 (sc-13162, Santa Cruz Biotechnology) 1:500; CDC20 (A301-180A, Bethyl laboratories) 1:500; BUBR1 (612503, BD transduction laboratories); BUBR1 (A300-386A, Bethyl laboratories) 1:500; MAD2 (610679, BD transduction laboratories) 1:500; MAD2 (A300-301A, Bethyl Laboratories) 1:500; BUB3 (611730, BD Transduction Laboratories) 1:500; APC3 (610455, BD Transduction Laboratories) 1:500; APC4 (monoclonal antibody raised against a C-terminal peptide) 1:500; BLINKIN (a kind gift from M. Yanagida and T. Kiyomitsu) 1:50; anti-myc-epitope (9E10, Santa Cruz Biotechnology) 1:500; anti-flag epitope (M2, Sigma) 1:5000; anti-GFP (Clone 3.1 and 7.1, Roche) 1:200.
Secondary antibodies: IRDye 680CW donkey anti mouse (926-68072, LI-COR), IRDye 800CW donkey anti mouse (926-32212, LI-COR); IRDye 680CW donkey anti rabbit (926-32223, LI-COR); IRDye 800CW donkey anti rabbit (926-32213, LI-COR) were all used at 1:10000.
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2

Mitotic Spindle Checkpoint Protein Detection

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The following antibodies were used at the indicated dilutions. CDC20 (sc-13162, Santa Cruz Biotechnology) 1:500; CDC20 (A301-180A, Bethyl laboratories) 1:500; BUBR1 (612503, BD transduction laboratories); BUBR1 (A300-386A, Bethyl laboratories) 1:500; MAD2 (610679, BD transduction laboratories) 1:500; MAD2 (A300-301A, Bethyl Laboratories) 1:500; BUB3 (611730, BD Transduction Laboratories) 1:500; APC3 (610455, BD Transduction Laboratories) 1:500; APC4 (monoclonal antibody raised against a C-terminal peptide) 1:500; BLINKIN (a kind gift from M. Yanagida and T. Kiyomitsu) 1:50; anti-myc-epitope (9E10, Santa Cruz Biotechnology) 1:500; anti-flag epitope (M2, Sigma) 1:5000; anti-GFP (Clone 3.1 and 7.1, Roche) 1:200.
Secondary antibodies: IRDye 680CW donkey anti mouse (926-68072, LI-COR), IRDye 800CW donkey anti mouse (926-32212, LI-COR); IRDye 680CW donkey anti rabbit (926-32223, LI-COR); IRDye 800CW donkey anti rabbit (926-32213, LI-COR) were all used at 1:10000.
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3

Antibody-mediated protein analysis

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The following antibodies were used: mouse monoclonal antibodies to α-tubulin (Santa Cruz, Dallas, TX, USA, sc-23948), RSK2 (Santa Cruz, sc-9986), BubR1 (BD Transduction, San Jose, CA, USA, 612503) and cyclinB (Santa Cruz, sc-245), and rabbit polyclonal antibody to actin (Sigma, St Louis, MO, USA, A2066), p-p90RSK(Ser380) (Cell Signaling, Danvers, MA, USA, 11989) and p-GSK3β (Santa Cruz, sc-81496) and human anticentromere antibody (ACA; ImmunoVision, Springdale, AR, USA, HRN-0101). All used horseradish peroxidase-conjugated antibodies were obtained from Santa Cruz. The following fluorochrome-conjugated secondary antibodies were used: anti-mouse Alexa-488 (Invitrogen, Waltham, MA, USA, A11059) and anti-human Texas Red (Vector Laboratories, Burlingame, CA, USA, TI-3000). BI-1870 RSK-specific inhibitor was generously provided by Dr. Hilary McLauchlan (University of Dundee, Scotland, UK). MG132 and thymidine were purchased from Sigma-Aldrich. pKH3, HA-tagged WT-RSK2 and HA-tagged RSK2 K/R mutant were generously provided by Dr. John Blenis (Harvard University, Boston, MA, USA).
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4

Immunofluorescence Assay for Mitotic Regulators

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For immunofluorescence, cells were pretreated with CCT271850 for 1 h, then treated with nocodazole, MG132 and CCT271850 for additional 1 h. Cells were fixed and stained according to the protocol previously described (Gurden et al, 2015 (link)). Primary antibodies used were as follows: anticentromere antibodies (ACA; ImmunoVision, Springdale, AR, USA, HCT-0100), BubR1 (BD Biosciences, San Jose, CA, USA, 612503), Mad1 (Abcam, Cambridge, UK, ab45286), Mad2 (Bethyl Laboratories Inc., Montgomery, TX, USA, A300-301A), MPS1 (Invitrogen, 35–9100), MPS1 pT33pS37 (Life Technologies, 44–1325 G) and Zwint-1 (Abcam, ab84367). Images were acquired using a Zeiss LSM 710 confocal microscope and processed using the Volocity 3D Image analysis software (PerkinElmer). Time-lapse microscopy was performed in 96-well Ibidi plate (Thistle Scientific, Glasgow, UK) using a Diaphot inverted microscope (Nikon, Tokyo, Japan), in a humidified CO2 chamber at 37 °C, using a motorised stage (Prior Scientific, Cambridge, UK), controlled by Simple PCI software (Compix, Irvine, CA, USA).
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5

Immunoprecipitation and Immunoblotting of Cell Lysates

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Cells were lysed at 4°C for 30 mins in lysis buffer: 30 mM Tris HCl, 150 nM NaCl, 2 mM EDTA, 10% Glycerol, 0.2% Triton X-100, with PhosSTOP (Roche) and Complete protease inhibitors (Roche). Lysates were incubated with anti-CDC20 antibody (Abcam, 26483) for 1 hr at room temperature, then incubated a further 15 mins with dynabeads (Life technologies). The beads were washed, bound proteins eluted using 0.2 M glycine [pH 2.5] and SDS loading buffer added prior to immunoblotting on NuPAGE Tris-Acetate gels (Life Technologies) as previously described [52 (link)]. Primary antibodies used were: α-tubulin (Sigma, T9026), BUB3 (BD Biosciences, 611731), BUBR1 (BD Biosciences, 612503), CDC20 (Millipore, MAB3775), GFP (Clonetech, 632381), Histone H3 (Abcam, ab1791), Histone H3 pS10 (Millipore, 06–570), MAD2 (Bethyl Laboratories Inc., A300-301A), MPS1 (Millipore, 05–682), MPS1 pT33pS37 (Life Technologies, 44–1325G), MPS1 pT67630, Cleaved PARP (Cell Signaling, 9541), Cleaved Caspase 3 (Cell Signaling, 9661), p53 (Thermo Fisher Scientific, MS-738-P).
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6

Immunofluorescence Staining of Cell Components

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The cells grown on coverslips were fixed with 3% paraformaldehyde solution at room temperature for 10 min and then permeabilized with 0.5% Triton X-100 at room temperature for 5 min. The cells were incubated with antibody against Aurora B (Santa Cruz Biotechnology; sc-25426), Aurora B-pT232 (Santa Cruz Biotechnology; sc-293127), PLK1 (Santa Cruz Biotechnology; sc-55504), PLK1-pT210 (Abcam; ab39068), Mad2 (Pierce; PA5-21594), BubR1 (BD Biosciences; 612503), histone H3-pS10 (Sigma; 06570), CCAR2 (Bethyl Laboratories; A300-434A), CREST (ImmunoVision, Springdale; HCT-0100), Pericentrin (Abcam; ab28144) or α-Tubulin (Invitrogen; PA5-29444, Sigma; T5168) at 37 °C for 20 min and then incubated with corresponding secondary antibody at 37 °C for 20 min. The nuclei were counterstained with Hoechst 33342 (Invitrogen; H21492). After a final wash with PBS, coverslips were mounted with antifade solution containing para-phenylenediamine and glycerol in PBS.
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7

Immunocytochemistry of mitotic proteins

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Cells grown on coverslips were fixed with 3% paraformaldehyde solution at room temperature for 10 min and then permeabilized with 0.5% Triton X-100 at room temperature for 5 min. The cells were incubated with antibody against Aurora A (BD Biosciences, 610938), Aurora B (Santa Cruz, sc-25426), BubR1 (BD Biosciences, 612503), Pericentrin (Abcam, 28144) or CREST (ImmunoVision, HCT-0100) at 37 °C for 20 min and then incubated with corresponding secondary antibody at 37 °C for 20 min. For the staining with α-tubulin (Abcam, 18251) and Pericentrin antibodies, the cells were fixed with cold methanol at -20 °C for 20 min and then rehydrated in PBS three times. The cells were post-fixed with paraformaldehyde and permeabilized as described above. The nuclei were counterstained with Hoechst 33342. After a final wash with PBS, coverslips were mounted with antifade solution containing para-phenylenediamine and glycerol in PBS. The staining was determined using laser-scanning confocal microsope (LSM700, Carl Zeiss). Images are acquired using ZEN software (Carl Zeiss) [68 (link)].
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8

Cell Lysis and Western Blot Analysis

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Cells were lysed on ice for 10 min using NETN lysis buffer (100 mM NaCl, 1 mM EDTA, 20 mM Tris-HCl, 0.5% Nonidet P-40, 50 mM β-glycerophosphate, 10 mM NaF, and 1 mM Na3VO4) containing a protease inhibitor cocktail (Millipore; 535140). After centrifugation at 12,000 × g for 5 min, the supernatant was saved as a crude cell extract. This was boiled in Laemmli buffer and loaded onto SDS-polyacrylamide gel. Western blotting was performed according to a standard protocol. The following antibodies were used for western blotting: GAPDH (Santa Cruz Biotechnology; sc-25778), β-actin (Cell Signaling Technology, 4970), FLAG (Sigma; 3165), Myc (Cell Signaling Technology; 2278), Cyclin B1 (Santa Cruz Biotechnology; sc-752), Cyclin D1 (Santa Cruz Biotechnology; sc-8396), Aurora B (Cell Signaling Technology, 3094), Aurora B-pT232 (Santa Cruz Biotechnology; sc-293127), PLK1 (Santa Cruz Biotechnology; sc-55504), PLK1-pT210 (Abcam, ab39068), BubR1 (BD Biosciences, 612503). BubR1-pS670 antibody was provided by C.W. Lee (Sungkyunkwan University). CCAR2 antibody was obtained from immunized rabbit with GST-fused CCAR2 recombinant protein [65 , 66 (link)].
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9

Protein Extraction and Western Blot

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Cells were harvested in a RIPA buffer consisting of 50 mM Tris-HCl (pH 8.0), 150 mM sodium chloride, 1.0% (v/v) Igepal CA-630 (NP-40), 0.5% (w/v) sodium deoxycholate, and 0.1% (w/v) sodium dodecyl sulphate (SDS) supplemented with protease and phosphatase inhibitor cocktails from Sigma-Aldrich. The samples were then diluted in 3× sample buffer [187.5 mM Tris-HCl (pH 6.8), 6% (w/v) SDS, 30% glycerol, 150 mM DTT, 0.03% w/v bromophenol blue]. For the detection of PARP, cells were harvested in whole cell lysis buffer containing 62.5 mM Tris (pH 6.8), 2% (w/v) SDS, 10% (v/v) glycerol, 0.00125% (w/v) bromophenol blue and 50 mM DTT and the samples sonicated briefly. All extracts were denatured at 65°C for 10 min before separation of proteins on a polyacrylamide gel and transfer to PVDF membrane. The PVDF transfers were probed overnight at 4°C with primary antibodies and then incubated with horseradish peroxidase-conjugated anti-mouse or anti rabbit secondary antibodies (Promega, Madison, WI, USA). Protein expression was visualised by enhanced chemiluminescence. All primary antibodies were supplied by Cell Signaling Technology Inc. (Beverly, MA, USA) except for those generated against PARP, Bcl-2, pro-caspase-3, c-FLIP, β-tubulin and GAPDH which were obtained from Merck Biosciences and Bcl-x, and BubR1 from BD Biosciences (Bedford, MA, USA).
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10

Western Blotting Analysis of Cell Cycle Proteins

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Cells were lysed on ice for 10 minutes using NETN lysis buffer (100 mmol/L NaCl, 1 mmol/L EDTA, 20 mmol/L Tris‐HCl, 0.5% Nonidet P‐40, 50 mmol/L β‐glycerophosphate, 10 mmol/L NaF, and 1 mmol/L Na3VO4) containing a protease inhibitor cocktail (Millipore, Temecula, CA, USA; 535140). After centrifugation at 12, 000 g for 5 minutes, the supernatant was saved as a crude cell extract. This was boiled in Laemmli buffer and loaded onto a SDS‐polyacrylamide gel. Western blotting was performed according to a standard protocol. The following antibodies were used for Western blotting: Cyclin A (Santa Cruz Biotechnology, Dallas, TX, USA; sc‐751), Cyclin B1 (Santa Cruz Biotechnology; sc‐752), Cyclin D1 (Santa Cruz Biotechnology; sc‐753), p21 (Millipore; OP64), p53 (Santa Cruz Biotechnology; sc‐126), PARP‐1 (Santa Cruz Biotechnology; sc‐7150), Aurora A‐pT288 (Cell Signaling, Danvers, MA, USA; 3079), Aurora A (BD Biosciences, San Jose, CA; 610938), Aurora A‐pT288/Aurora B‐pT232/Aurora C‐pT198 (Cell Signaling; 2914), Aurora B (Cell Signaling; 3094), BubR1 (BD Biosciences; 612503), PLK1‐pT210 (Santa Cruz Biotechnology; sc‐135706), PLK1 (Cell Signaling; 4513), β‐actin (Cell Signaling; 4970), and GAPDH (Santa Cruz Biotechnology; sc‐25778). BubR1‐pS670 antibody was obtained from immunized rabbit with specific peptide.
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