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Agilent 6890a

Manufactured by Agilent Technologies
Sourced in United States

The Agilent 6890A is a gas chromatograph (GC) designed for the analysis of volatile and semi-volatile organic compounds. It features a temperature-programmable oven, a variety of inlet and detector options, and advanced control and data analysis software. The 6890A is a reliable and precise instrument for a wide range of applications in fields such as environmental analysis, food and beverage testing, and pharmaceutical research.

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19 protocols using agilent 6890a

1

GC-MS Analysis of Volatile Compounds

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GC-MS analyses were carried out with an Agilent 6890A gas chromatograph equipped with a Mass Selective Detector MSD 5973 mass spectrometer (Agilent Technologies, Palo Alto, CA, USA) and fitted with a DB-WAX capillary column (polyethylene glycol: 30 m × 0.25 mm i.d., 0.33 µm film thickness) (Agilent Technologies, Palo Alto, CA, USA). The transfer line temperature was set at 240 °C. The column carrier gas was helium at a constant flow rate of 2 mL/min. The mass spectrometer was operated in the electron impact mode (EI) at 70 eV, scanning the range 35–350 m/z at a scan rate of 2.36 scans/s and the ion source temperature was set at 230 °C. Samples (2 μL) were injected manually onto the GC in the split mode at a 25:1 ratio. Solvent delay time was set at 8 min. Gas chromatographic conditions were as reported in the previous paragraph. The volatile constituents were tentatively identified by comparing their elution order and mass spectra with data from the NIST library (Version 2.0f, National Institute of Standards and Technology, Gaithersburg, MD, USA, 2008) and the published literature [35 ].
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2

Determination of Phytosterol Content

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The phytosterol contents were determined as follows: 10 ml of 2 mol/L KOH in ethanol was used to saponify 0.2 g (accuracy 0.0001 g) of the tested oil samples and 0.5 ml of 0.5 mg/ml 5α‐cholestane (internal standard) at 60°C for 60 min; the unsaponifiable compositions were obtained with hexane. The hexane layer was dried over anhydrous sodium sulfate and silylated using 100 µl N, O–bis (trimethylsilyl) trifluoroacetamide + 1% trimethylchlorosilane (BSTFA + TMCS) at 105°C for 15 min. The mixture was then dissolved in 1 ml hexane for further analysis on an Agilent 6890A gas chromatography system (Agilent) equipped with a DB–5HT column (30 m × 0.32 mm, 0.1 μm; Agilent). The nitrogen (carrier gas) flow rate was 2.0 ml/min, while the detector and injection temperatures were maintained at 320°C. The oven temperature was programmed as follows: an original temperature of 60°C for 1 min, increased to 310°C at 4°C /min and maintained at this temperature for 10 min. The split ratio was 25:1, and the injection volume was 1 μl.
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3

Analytical Methods for Inulin and Ethanol

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The cell concentration was measured using the optical density at 620 nm. Concentrations of the reducing sugar in inulin were determined by the dinitrosalicylic acid method [61 (link)], and the total sugar was firstly hydrolyzed by 0.2 M H2SO4 at 100°C for 1 h, then measured by the methods of Miller [61 (link)] after adding an equivalent amount of 0.4 M NaOH.
The ethanol was analyzed by gas chromatography (Agilent 6890A, Agilent Technologies) as previously described [19 (link)]. Briefly, a hydrogen flame ionization detector and isothermal capillary column (solid phase: cross-linked polyethylene glycol, carrier gas: nitrogen, and injector temperature: 250°C) were operated at 250 and 120°C, respectively.
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4

Marine Sediment Metabolomics by GC-MS

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Marine sediment samples were analyzed, in triplicate, using a modified untargeted Gas Chromatography–Mass Spectrometry (GC-MSD) metabolomics protocol previously described [22 (link)]. Briefly, the community metabolomics analysis was performed on an Agilent 6890A gas chromatograph (GC) oven coupled to a 5973A mass spectrometer detector (MSD)(Agilent Technologies, Mulgrave, VIC, Australia). The GC-MSD conditions were as stated previously [34 (link),35 (link),36 (link)]. Data acquisition and spectral analysis were performed as per Beale et al. [8 (link)] and according to the Metabolomics Standard Initiative (MSI) chemical analysis workgroup [37 (link)]. Procedural blanks (n = 7) were analyzed randomly throughout the sequence batch.
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5

Volatile Compound Analysis by HS-SPME-GC-MS

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HS-SPME analysis was performed using an Agilent 6890A (Agilent, USA) Gas Chromatograph coupled to a Mass Spectrometer 5975 (Agilent, USA) and equipped with an HP-5MS column (30 m; 0.25 mm i.d.; 0.25 μm film thickness, Restek, Bellefonte, PA, USA). The oven temperature program was: from 40°C, hold 5 min, to 100°C at 5°C/min, then from 100°C to 200°C at 10°C/min and finally hold for 10 min. The GC injector was set at 250°C, and the injections were performed in splitless mode. The carrier gas was helium at the constant flow of 1 mL−1. The transfer line to the mass spectrometer was maintained at 230°C, and the ion source temperature was set at 250°C. The mass spectra were obtained using electron impact mode (70 eV) by collecting the data at a rate of 1 scan s−1 over the m/z range of 45–450.
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6

Soil Microbial Community Analysis via PLFA

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Phospholipid fatty acids were extracted from 3.0 g of soil as described previously (27 (link)) and were analyzed by the use of a Hewlett-Packard Agilent 6890A gas chromatograph (Agilent Tech. Co., USA) equipped with an Agilent Ultra-2 (5% phenyl)-methylpolysiloxane capillary column (25 m by 0.2 mm by 0.33 mm) and flame ionization detector. The detected levels of PLFAs were notably low in sample 2UW, with many missing values compared to what was commonly observed in other samples. Hence, 2UW was excluded from all further data analyses. All PLFAs were used for estimating the total microbial biomass. The PLFAs selected to represent the bacterial biomass included a15:0, i15:0, 15:0, a17:0, cy17:0, i17:0, 17:0, 16:1ω5c, 16:1ω9c, and 18:1ω5c, while the fungal biomass was represented by 18:1ω9c (98 (link), 99 (link)). Relative abundance data were used for PLFA community composition analysis.
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7

Quantifying Colonic Short-Chain Fatty Acids

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About 1 g of colonic contents were used to measure the concentrations of SCFAs (acetate, propionate, butyrate, isobutyrate, valerate, and isovalerate) by using an Agilent 6890A gas chromatography (Agilent Technologies, Santa Clara, CA, United States) according to our previous study (Yin et al., 2018 (link)).
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8

Phytosterol Content Analysis in Oils

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The phytosterol contents were determined as follows: 10 ml of 2 mol/L KOH in ethanol was used to saponify 0.2 g (accuracy 0.0001 g) of the tested oil samples and 0.5 ml of 0.5 mg/ml 5α‐cholestane (internal standard) at 60°C for 60 min; the unsaponifiable compositions was obtained with hexane. The hexane layer was dried over anhydrous sodium sulfate and silylated using 100 µl N,O‐bis (trimethylsilyl) trifluoroacetamide + 1% trimethylchlorosilane (BSTFA + TMCS) at 105°C for 15 min. The mixture was then dissolved in 1 ml hexane for further analysis on an Agilent 6890A gas chromatography system (Agilent) equipped with a DB‐5HT column (30 m × 0.32 mm, 0.1 μm; Agilent). The nitrogen (carrier gas) flow rate was 2.0 ml/min, while the detector and injection temperatures were maintained at 320°C. The oven temperature was programmed as follows: an original temperature of 60°C for 1 min, increased to 310°C at 4°C/min, and maintained at this temperature for 10 min. The split ratio was 25:1, and the injection volume was 1 μl.
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9

SCFA Analysis by GC-FID

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Acetic, propionic, butyric and valeric acid from all samples were analyzed (n = 2) by GC-FID (Agilent 6890A, Agilent), using helium as the carrier gas (1.5 mL min−1) and a column DB-WAXtr (60 m, 0.325 mm × 0.25 µm). The temperature started at 50 °C for 2 min, at 15 °C min−1 was raised until 150 °C, at 5 °C min−1 was raised until 200 °C, at 15 °C min−1 was raised until 240 °C, and kept for 20 min. Results were expressed as a concentration (mM) of SCFA.
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10

Quantifying Short-Chain Fatty Acids in Fecal Samples

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Short-chain fatty acids (SCFAs) from the faecal samples were extracted according to a modified procedure of Zhao et al. [14 (link)]. SCFAs were determined by an Agilent 6890A (Agilent Technologies, Inc., 5301 Stevens Creek Blvd. Santa Clara, CA USA) gas chromatograph, a CP-Wax 52 CB capillary column (30 m × 0.25 mm, 0.25 μm), and a flame ionisation detector at 280 °C. The oven temperature program was as follows: hold at 175 °C for 1 min, increase by 20 °C/min to 190 °C, and then hold for 5 min. Acetic acid, propionic acid, butyric acid, isobutyric acid, isovaleric acid, valeric acid, and hexanoic acid solutions were used for identification and calibration. The results were expressed as µmol/g sample. Time point measurements of the SCFA content or microbial abundancies per group were calculated as medians from three SCFA content measurements or microbial abundancies in consecutive days before the time point.
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