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6 protocols using α sma 55135 1 ap

1

Protein Expression Analysis in Tissues

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Target tissue samples or cells were homogenized in ice-cold RIPA lysis buffer containing 1% protease inhibitor for 30 min. The lysates were centrifuged, and the supernatants were then recovered. The protein concentrations were measured with a bicinchoninic acid protein assay kit. The protein samples were then applied for sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). The separated proteins were transferred to a polyvinylidene fluoride membrane. The membranes were firstly blocked with 5% non-fat milk and then hybridized with the following antibodies: α-SMA (55135-1-AP; Proteintech, Wuhan, China), collagen I (66761-1-Ig, Proteintech), E-cadherin (20874-1-AP, Proteintech), vimentin (10366-1-AP, Proteintech), OGN (A07061, Boster, Pleasanton, CA, USA), p-mTOR (ab109268, Abcam), mTOR (ab2732, Abcam), Akt (Y409094, ABM, New York, NY, USA), p-Akt (Y011054, ABM) at 4 °C overnight. Horseradish peroxidase-conjugated secondary antibodies and ECL were used for detection and the protein expression was normalized to that of β-actin.
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2

IHC Staining of Colorectal Tissues

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IHC staining of colorectal tissues was performed on 5-µm-thick formalin-fixed and paraffin-embedded (FFPE) tissue sections according to the standard procedures as described previously [14 (link)]. The sections were stained using antibodies against CXCR7 (ab72100) (Abcam, USA), α-SMA (55135-1-AP), Vimentin (10366-1-AP), and Ki67 (27309-1-AP) (Proteintech, USA) according to the manufacturers’ instructions. The IHC results were taken with a digital slide scanning system (Pannoramic Scan, 3DHISTECH Ltd) and semiquantified of mean density (IOD/area) by image-pro plus 6 software (IPP, USA).
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3

Western Blot Analysis of Fibrosis Markers

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RIPA Buffer (Tris–HCl 25 mM pH 7.4, NaCl 150 mM, 1% Triton X-100, Sodium Deoxycholate 1%, SDS 0.1%, EDTA 2 mM) containing a protease/phosphatase inhibitor mixture (Roche) was utlized to lyse cells. After electrophoresis with SDS-PAGE, the separated proteins from the gel (50 μg) were transferred on nitrocellulose (NC) membranes, followed by incubation with primary antibodies. Following incubation with appropriate HRP-labeled secondary antibodies, ECL HRP substrate (Beyotime) was employed to detect signals. The primary antibodies used were as follow: α-SMA (55135-1-AP, Proteintech), Collagen I (14695-1-AP, Proteintech), Timp-1 (CSB-PA023560YA01HU, CUSABIO, Wuhan, China), Vimentin (10366-1-AP, Proteintech), Erk (16443-1-AP, Proteintech), p-Erk (sc-81492, Santa Cruz Biotechnology, Santa Cruz, CA, USA), p38 (14064-1-AP, Proteintech), p-p38 (AF4001, Affinity, Changzhou, China), JNK (AF6319, Affinity), p-JNK (AF3318, Affinity), NF-κB (AF5006, Affinity), p-NF-κB (AF2006, Affinity).
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4

Antibody Acquisition for Protein Analysis

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Antibodies against collagen type V alpha 1 chain (COL5A1) (A1515), SMAD family member 2 (SMAD2) (A11498), phosphorylation SMAD family member 2 (AP0269), and elastin (A2723) were acquired from ABclonal (Wuhan, China); antibodies against matrix metallopeptidase 9 (MMP9) (10375‐2‐AP), transforming growth factor‐beta 1 (TGF‐β1) (21898‐1‐AP), GAPDH (10494‐1‐AP), and α‐SMA (55135‐1‐AP) were obtained from Proteintech (Wuhan, China); elastin (sc‐166543) was obtained from Santa Cruz Biotechnology (CA); secondary antibodies were acquired from Pierce Biotechnology (IL).
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5

Western Blot for Cellular Proteins

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Total cellular proteins were prepared according to our lab’s protocol [51 (link)]. Tested samples were resolved by SDS-PAGE (10% or 12%) and then underwent immunoblotting. Primary antibodies against cdc2 p34 (sc-54, 1:1000), p-cdc2 p34 (sc-12341, 1:1000), cyclin B1 (sc-594, 1:1000), Cdc25C (sc-327, 1:1000), caspase 3 (sc-56053, 1:500), PARP (sc-7150, 1:2000), Mcl-1 (sc-819, 1:500), and DRP1 (sc-101270, 1:500) were purchased from Santa Cruz Biotechnology (Dallas, TX, USA), Vimentin (10336-1-AP, 1:2000), MMP-2 (10373-2-AP, 1:1000), N-cadherin (22018-1-AP, 1:2000), E-cadherin (20874-1-AP, 1:1000), α-SMA (55135-1-AP, 1:1000), and integrin alpha-4 (19676-1-AP, 1:1000) were purchased from Proteintech (Taipei, Taiwan), and β-actin (MAB1501, 1:10,000) was from Merck Millipore (Burlington, MA, USA).
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6

Protein Expression Analysis with Cell Fractionation

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Nuclear/cytoplasmic fractions were separated by using Cell Fractionation Kit (Cell Signaling Technology, USA) according to the manufacturer's instructions, and the whole cell lysates were extracted using RIPA Buffer (Cell Signaling Technology). Western blot was performed according to a standard method as described previously 49 . Protein bands were visualized using ECL reagents (Pierce, USA). Antibodies against IL-6 (sc-28343, Santa Cruz), CD73 (PA5-29750, Thermo-Fisher), gp80 (IL-6Rα, sc-373708, Santa Cruz), gp130 (sc-655, Santa Cruz), p-STAT3 (sc-8001-R, Santa Cruz), SOX-2 (66411-1-Ig, Proteintech), MMP-9 (sc-393859, Santa Cruz), Ki-67 (27309-1-AP, Proteintech), Vimentin (sc-373717, Santa Cruz), α-SMA (55135-1-AP, Proteintech), STAT3 (sc-8019, Santa Cruz), PCNA (10205-2-AP, Proteintech), Bax (50599-2-Ig, Proteintech) and Bcl-2 (12789-1-AP, Proteintech) were used. The membranes were stripped and reprobed with an anti-GAPDH antibody (sc-47724, Santa Cruz) as the loading control.
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