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10 protocols using ar1109

1

Immunofluorescent Analysis of α-SMA and Nrf2

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Slides were then incubated with specific primary antibodies against a-SMA (rat, Ab5694, 1 : 200, Abcam, USA) and Nrf2 (Ab62352, 1 : 200, Abcam, USA) at 4°C overnight. Next day, after washing with 1x PBS for 5 min/3times, slides were incubated with secondary antibody (1 : 500, Boster, China) for 1 h at room temperature. Then, samples were stained with DAPI (AR1177, BOSTER, China) and sealed in antifade fluorescence mounting medium (AR1109, BOSTER, China) with coverslips. The detection of a-SMA and Nrf2 proteins was performed under a fluorescence microscope (IX71, Olympus, Japan). Nrf-2 positive cells were counted using Image pro plus software. The percentage of Nrf-2 in the nucleus was quantitatively analyzed by the ratio of nuclear Nrf-2 positive cells to total cells in each field.
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2

Immunofluorescence Staining of Brain Slices

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Brain slices were washed in PBS, permeabilized for 15 min by shaking at room temperature with PBS containing 0.5% Triton X-100, rinsed in PBS, and then blocked with 5% bovine serum albumin (BSA; AR1006, BOSTER) in PBS for 1 h at room temperature. Thereafter, sections were incubated overnight at 4 °C with primary antibody and then placed in a wet box containing a little water. After rinsing, sections were incubated with appropriate fluorescence-conjugated secondary antibodies at room temperature for 1 h. For ThioS staining, sections were stained with 0.05% ThioS (23059, AAT Bioquest) in 50% ethanol in dark for 8 min at room temperature, followed by two rinsing in 80% ethanol for 10 s each. Finally, DAPI (C0065, Solarbio) was used for nuclear staining. Slides were then sealed with the fluorescent mounting medium (AR1109, BOSTER). Immunofluorescence images were acquired using a fluorescent microscope (Olympus) and analyzed using the ImageJ software.
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3

Pancreatic Tissue Immunostaining Protocol

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The pancreas was removed from a centrifuge tube with 4% paraformaldehyde and then a small part of the complete pancreas was cut. The pancreas tissues were soaked in 15% sucrose and dehydrated overnight. Then tissues were transferred into 30% sucrose and dehydration overnight. The dehydrated tissue was taken out and embedded in OCT Compound (SAKURA, 4583) and frozen in −80 °C. The tissues were subsequently sliced into 8 μm sections using freezing microtome (LEICA CM1850UN).
Sections were fixed with 4% paraformaldehyde and permeabilized for 20 min. After twice washes with PBS for 5 min, permeabilization with 0.5% Triton X-100/SDS/PBS for 20 min at room temperature, followed by three washed in PBS. Slides were blocked in 5%FBS/PBS/1% BSA for 3 h at room temperature and incubated in the indicated antibodies at 4 °C overnight. After twice washed with PBST for 5 min and washed with PBS for 5 min, dark incubated slides with FITC-labeled secondary antibody (Bioss, bs-0358G) for 2 h at room temperature. Slides were then washed twice with PBST for 5 min and washed with PBS for 5 min, followed were incubated with Hoechest 33342 for 10 min at room temperature. After three washes with PBS, the slides were covered with fluorescence decay resistant medium (BOSTER, AR1109). All slides were quantified by fluorescence microscopy.
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4

Immunofluorescent Analysis of Liver PD-1 and CD8

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Immunofluorescence staining of paraffin-embedded human liver tissue sections was performed using anti-PD-1/CD279 (66220-1-Ig, Proteintech, Rosemont, IL, United States) and anti-CD8α (PB9249, Boster Bio, Pleasanton, CA, United States) antibodies. Antigen retrieval was performed with EDTA buffer (AR0023, Boster Bio). Tissue sections were blocked with 10% goat serum (AR1009, Boster Bio), and then incubated with rabbit anti-CD8α antibody (1:200 dilution) and mouse anti-PD-1 antibody (1:4000 dilution) at 4 °C overnight. Secondary antibodies including DyLight594 fluorescein goat anti-mouse (BA1141, Boster Bio) and fluorescein DyLight488 goat anti-rabbit (BA1127, Boster Bio) IgGs were then added and incubated for 45 min at 37 °C. DAPI staining solution (AR1176, Boster Bio) was used for counterstaining at room temperature for 3 min, and then washed with PBS (pH 7.2-7.6) (AR0030, Boster Bio). Slides were mounted using anti-fluorescent quench mounting medium (AR1109, Boster Bio). Finally, whole-slide scanning (APERIOVERSA8, Leica, Wetzlar, Germany) and image acquisition (BX51, Olympus, Tokyo, Japan) were performed.
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5

Pancreatic Immunohistochemistry and Quantification

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Based on our previous report (Fan et al., 2017 (link)), the pancreas was fixed in 4% paraformaldehyde and then a small part of the complete pancreas was cut. The pancreas tissues were soaked in 15% sucrose and 30% sucrose dehydrated overnight, respectively. The dehydrated tissues were embedded in OCT Compound (SAKURA, 4583) and frozen in −80°C. The tissues were subsequently sliced into 8 μm sections using freezing microtome (LEICA CM1850UN).
Sections were fixed with 4% paraformaldehyde for 20 min. Then permeabilized with 0.5% Triton X-100/SDS/PBS for 20 min, and blocked with 5%FBS/PBS/1% BSA for 3 h at room temperature. The slides were then stained with insulin (CST, 3014) and glucagon (Boster Biological Technology, BM1621) antibody overnight at 4°C. After washed, slides were dark incubated with FITC-conjugated goat anti-rabbit IgG (ABclonal, AS011) and Cy3-conjugated goat anti-rabbit IgG (ABclonal, AS008) for 2 h at room temperature. Sections were then washed with PBST and PBS for 5 min, followed incubated with Hoechest 33342 for 10 min at room temperature. After three washes with PBS, the slides were covered with fluorescence decay resistant medium (Boster, AR1109). Pancreatic sections were imaged using a light microscopy (Olympus BX51). The insulin-positive area and pancreatic area were measured using ImageJ software (Rockville, MD, United States).
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6

Sperm H3K27me3 Immunofluorescence Assay

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Sperm suspensions from 5 mice of each group were diluted in distilled water, smeared on a cover glass, and dehydrated at room temperature for 2 h. Sperm deagglutination solution (25 mM DTT, 0.2% Triton X-100 and 200 IU/mL heparin) was added dropwise to the smear and incubated in a 37°C incubator for 15 min. The sperm deagglutination solution was discarded, and the 3.7% paraformaldehyde solution was used for fixation for 20 min. After washing with PBS and blocking with 5% BSA for 2 h at room temperature, the sample was incubated with rabbit-derived anti-H3K27me3 (A2363, ABclonal) primary antibody for 2 h. After washing three times with PBS, the goat anti-rabbit FITC-labeled secondary antibody (AS011, ABclonal) was added and incubated for 1 h. Hoechst 33342 (14533, Sigma) was used to stain the sperm nucleus. Finally, the sample was mounted with antifluorescence quenching mounting fluid (AR1109, BOSTER) and observed under the oil microscope of Olympus IX-53 with the microscopic image acquisition system (CellSens Dimension) (Olympus, Tokyo, Japan). Five sections were obtained from each mouse. Five high-power fields (×1000) were randomly selected, and ImageJ software (NIH) was used to analyze the average fluorescence intensity value of H3K27me3 in sperm.
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7

Immunofluorescence Staining of H9C2 Cells

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H9C2 cells growing on the glass slide were fixed with 4% polyformaldehyde at room temperature for 20 min, washed with precooled PBS 3 times for 5 min, added to 0.01% Triton X-100, well ventilated at room temperature for 10 min, washed with PBS 3 times for 5 min, sealed with PBST containing 1% BSA at room temperature for 1 h, and incubated with 500 μL diluted antibodies GRP78 (ab21685; Abcam) and caspase3 (ab179517; Abcam) at 4°C overnight. On the following day, the cells were washed with PBST 3 times for 5 min, incubated with 1:200 diluted HRP-labelled antibody in a wet box for 1 h, and washed with PBST 3 times for 5 min. After adding a drop of DAPI (AR1176; Boster) to the center of the glass slide, the cells were incubated for 5‒10 min away from light and washed with PBST 3 times for 5 min. After dripping a drop of anti-fluorescence attenuation sealing agent (AR1109; Boster), images were captured under a fluorescence microscope (Nikon).
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8

Immunofluorescence Analysis of Pancreatic Tissue

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Following fixation with 4% paraformaldehyde, mouse pancreatic tissue sections were processed for embedding in paraffin, and then deparaffinized utilizing xylene and ethanol. The sections were treated with Citrate buffer (C1010, Solarbio, Beijing, China) which was heated and subsequently immersed. The mixture was then reduced to low heat and left to process for a duration of 15 min. To prevent nonspecific binding, the sections were blocked with a solution containing 3% hydrogen peroxide for a duration of 20 min. Sections were incubated with either insulin or glucagon primary antibodies overnight at 4 °C, then incubated with secondary antibodies for 1 h. Cell nuclei were stained with a DAPI solution, and sections were blocked with an anti-fluorescence quenching sealer (AR1109, Boster, Wuhan, China). Lastly, the sections were captured using an inverted fluorescence microscope (NIB900, Leica Microsystems, Germany).
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9

Colocalization of GFAP and GSNO in Colon

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Double immunofluorescence labeling was used to determine the colocalization of GFAP and GSNO in the colon. After placement in 4% paraformaldehyde, the samples were sliced, immersed in 0.01 M citrate buffer (pH 6.0), heated until boiling, washed with PBS, and blocked with 10% serum (Zhejiang Tianhang Biotechnology, China) for 30 min. Primary antibodies [anti-GFAP, rabbit monoclonal antibody, 1:100 (Bioss, China); anti-GSONR, mouse monoclonal antibody, 1:100 (Proteintech, United States)] were added to the samples. After the samples were washed with PBS, a secondary antibody [FITC-labeled goat anti-rabbit IgG (ServiceBio, China); Cy3-labeled goat anti-mouse IgG (ServiceBio, China)] and 4′,6-diamidino-2-phenylindole were added and the samples were incubated at room temperature for 10 min, washed with PBS, sealed with fluorescence decay-resistant sealing tablets (AR1109, Boster, China), and examined under a fluorescence scanning microscope camera system (P250 Flash, Tangier, China).
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10

Immunofluorescence Staining of NEK2 and PKM2

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The cell suspensions were collected separately into centrifuge tubes, and cells were pelleted by centrifugation at 800g for 3 min. Then cells were washed twice in PBS, smeared onto glass slides, air-dried, and fixed in 3.7% formaldehyde at 37°C for 15 min, followed by 0.1% Triton X-100 treatment at room temperature for 10 min. Then the slides were blocked with Goat serum for 1 h at room temperature. After that, cells were incubated with the antibody against NEK2 (1:50, sc-55601, Santa Cruz) and PKM2 (1:100, 4053, Cell Signaling Technology) overnight at 4°C. Then cells were incubated with Alexa Fluor 488 goat anti-rabbit lgG (A11008, Life Technologies) and Alexa Fluor 594 goat anti-mouse lgG (A11005, Life Technologies) for 1h at room temperature and washed with PBS. Nuclei were stained with 4’,6-diamidino-2-phenylindole (DAPI) for 5 min, protected from light. Finally, the sections were sealed by an anti-fluorescence quencher (AR1109, Boster). Olympus FV1000 laser scanning confocal microscopy (Olympus, Japan) was used to obtain images.
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