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62 protocols using n phenylthiourea

1

High-Resolution Confocal Imaging of Zebrafish Embryos

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Confocal microscopy was performed using LSM780 and LSM880 microscopes (Carl Zeiss Microscopy GmbH; objective lenses: Plan-Apochromat ×20/0.8; LD C-Apochromat ×40/1.1 W Korr M27). For filopodia analysis in zebrafish at high resolution, images were acquired with the LSM880 Airyscan module. For life imaging of VE-cadherinTS embryos, the Online Fingerprinting mode of the LSM880 microscope was utilized. In general, PFA-fixed or living zebrafish embryos were embedded in 0.3% agarose, which was dissolved in E3 medium and additionally supplemented with N-Phenylthiourea (30 mg/L, Sigma-Aldrich) and Tricaine (19.2 mg/L, Sigma-Aldrich) for living embryos as previously described59 (link). For time-lapse analysis, the agarose was additionally supplemented with IWR-1 or DMSO and a stable temperature of 28.5 °C was maintained using a heating chamber. Assembly of confocal stacks and time-lapse movies was conducted using Imaris 8/9 software (Bitplane). Quantification of signal intensity and volume was done using the Imaris surface-rendering algorithm.
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2

Visualizing Retinal Ganglion Cells in Zebrafish

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Retinal ganglion cells were imaged at 72 hpf after injected slc25a46 and control morpholinos into Tg(Islet2b:eGFP)34 embyros. At 24 hpf, n-phenylthiourea (Sigma) was added to the water to suppress pigment development. Live fish were anesthetized with tricaine methanesulfonate (Sigma), embedded in 1.5% agarose, and imaged using a Leica confocal microscope 20X/air lens. 1 μm Z-stacks were processed with maximum intensity and thresholded for analysis. Calculations were made by tracing GFP positive areas. All possessing was done with Fiji (Image J). LUT: Green Fire Blue was used to make the figure.
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3

Whole-Mount In Situ Hybridization Protocol

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WISH was carried out as previously described.65 (link) For WISH on embryos older than 24 h post fertilisation, N-phenylthiourea (Sigma) was used to suppress pigmentation. For hair cell ablation-induced hspd1 expression, WT embryos at 5 dpf were incubated with or without 10 μM copper sulfate for 2 h and then fixed at different time points for WISH. For fin amputation–induced hspd1 expression, we amputated caudal fins from WT embryos at 3 dpf and then fixed at different time points for WISH. For histological sectioning after WISH, single embryos were embedded in paraffin, transversely sectioned at a thickness of 5 μ and then stained with fast nuclear red (HistoServ, Germantown, MD, USA).
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4

Larval Hemolymph Protein Extraction

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Hemolymph samples were collected as follows: Forty L3 larvae were bled on a glass slide on ice; hemolymph was recovered by dissection, mixed with 10 μl of PBS supplemented with complete protease inhibitor solution (Roche) and 1mM phenylmethylsulfonyl fluoride (Sigma) and N‐Phenylthiourea (Sigma), and then centrifuged for 10 min at 1,000 g, 4°C. This was followed by a second centrifugation 5 min 10,000 g. Protein concentration of the samples was determined by BCA assay, and 40 μg of protein extract was separated on a 4–12% acrylamide precast Novex NuPage gel (Invitrogen) under reducing conditions and transferred to membranes (Invitrogen iBlot 2). After blocking in 5% non‐fat dry milk in PBS containing 0.1% for 1 h, membranes were incubated at 4°C overnight with a mouse anti‐RFP antibody (Abcam) in a 1:1,000 dilution. Anti‐mouse‐HRP secondary antibody (Jackson ImmunoResearch) in a 1:15,000 dilution was incubated for 45 min at room temperature. Bound antibody was detected using ECL (GE Healthcare) according to the manufacturer's instructions. Membranes were imaged on a ChemiDoc XRS+ (Bio‐Rad).
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5

Preparation of Stock Solutions

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Chemical compounds were dissolved in DMSO to prepare stocks of 10 mM nifedipine (Sigma-Aldrich N7634, Darmstadt, Germany), 20 mM Bay K8644 (Tocris 1544), 10 mM propranolol (Sigma-Aldrich P0884, Darmstadt, Germany), 50 mM terfenadine (Tocris 3948), and 7.5% N-phenylthiourea (Sigma-Aldrich, Darmstadt, Germany).
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6

Zebrafish Protocols for Vascular Development

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Zebrafish were maintained according to standard protocols (59 ). Zebrafish were kept at 28.5 C in a 14-h light and 10-h dark cycle. After natural spawning, embryos were collected and raised at 28.5 C in 0.5 × E2 medium containing methylene blue (egg water). To avoid pigmentation, embryos were changed to 0.003% N-Phenylthiourea (P7629, Sigma) in egg water at 1 dpf. The following strains were used: Tg(flk1:eGFP) s843 (31 (link)), Tg(flk1:NLS-Eos) ncv6 (32 (link)), Tg(Tp1:eGFP) um14 (60 (link)), Tg(hsp70l:NICD-eGFP) (61 (link)), Tg(fli1:DsRed) um13 (62 (link)), Tg(flk1:loxP-DsRedx-loxP-eGFP) (63 (link)), mib ta52b (64 (link)), Tg(etv2:NLS-d2eGFP) hkz037 , Tg(hsp70l:etv2-P2a-mCherry) hkz038 , Tg(etv2:mCherry-T2a-CreER T2
) hkz039 , Tg(flk1:loxP-DsRedx-loxP-eGFP) hkz040 , and Tg(flk1:runx1-P2a-GFP) hkz041 . All animal experiments were conducted according to the guidelines of the Animal and Plant Care Facility and approved by the Animal Ethics Committee of the Hong Kong University of Science and Technology.
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7

Spotted Gar Spawning and Embryo Culture

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Wild adult spotted gar were collected from the Atchafalaya River Basin, Louisiana. Spotted gar broodstock were injected with Ovaprim© (0.5 ml/kg) to induce spawning and cultured in a 2-m diameter tank containing artificial spawning substrate. Mean total length/weight for female and male broodstock was 691mm/1235g and 571mm/616g, respectively. Fertilized eggs from a group spawn were shipped to the University of Oregon and arrived two days after fertilization. Embryos were manually dechorionated with forceps and raised in fish water (1ppt salinity) at 24°C in a 14h light, 10h dark cycle. To inhibit melanin formation, 0.015 g/l N-Phenylthiourea (Sigma-Aldrich) was added to the fish water without any signs of developmental delay or malformations. Developmental stages were determined following (Long and Ballard, 2001 (link)). Animals were handled in accordance with good animal practice as approved by the University of Oregon Institutional Animal Care and Use Committee (Animal Welfare Assurance Number A-3009-01, IACUC protocol 12-02RA).
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8

Zebrafish Embryo Imaging Protocol

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Zebrafish Tg(claudinK:gal4;uas:mgfp) embryos were raised at 28 °C in an E3 embryo medium (5 mM NaCl, 0.17 mM KCl, 0.33 mM CaCl2, 0.33 mM MgSO4). First, 24-h post fertilization, they were transferred to the E3 medium containing N-phenylthiourea (Sigma) for inhibiting pigmentation. After 6 to 21 dpf, zebrafishes were anesthetized by adding tricaine (Sigma) to the E3 medium. They were then immersed in 1.5% low-melting agarose (invitrogen) and mounted on a slide glass. We supplied the mounted specimen with the E3 medium containing tricaine to maintain anesthesia during the investigation under the microscope. The immersion solution was continuously warmed by a temperature controller (TC200; Thorlabs, USA) to maintain the temperature at 24–26 °C. All animal experiments were approved by the Korea University Institutional Animal Care & Use Committee.
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9

Hemolymph Collection from Honey Bees

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Bee hemolymph was collected by making a small incision in the dorsal thorax and extracting 10 μL per bee using Wiretrol II Capillary micropipettes (VWR) into an Eppendorf tube that contained 2 μL of 5% N-phenylthiourea (PTU, w/v; Sigma Aldrich, Overijse, Belgium) in 1 mL of 50% methanol/PBS to prevent melanization. The hemolymph sample was collected on ice and immediately put on dry ice afterwards. All hemolymph collection was performed under binocular microscope, and three rules were strictly followed to guarantee the quality of sampling: (i) the hemolymph should be pure and transparent; (ii) no other tissues were perforated; (iii) sampling time (incision and extraction) per bee is less than 35 s. All samples were stored at −80 °C until chemical analysis.
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10

Xenotransplantation of Labeled Human Cells in Zebrafish

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Prior to injection, HCT8 peak and PtcDN cells were treated for 48h with IgG isotype control or 5E1 antibodies. Then, 9×105 cells were resuspended in serum-free medium and stained with lipophilic dyes DiO or DiD for 20 minutes at 37°C (ThermoFisher). Cells were then washed and resuspended in 30 μL of PBS. For zebrafish xenotransplantation, 48 hours post-fecundation (hpf) zebrafish embryos were anaesthetized with tricaine (Sigma-Aldrich) and 20 nL of cell suspension (approximately 300 labeled human cells) were injected into the perivitelline cavity of each embryo. The embryos were then placed at 30°C for 24 hours and allowed to recover in the presence of N-phenylthiourea (Sigma-Aldrich) to inhibit melanocyte formation. For imaging and metastasis assessment, zebrafish embryos were anaesthetized with tricaine and imaged using an Axio Observer Zeiss microscope (Zeiss).
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