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25 protocols using osteopontin

1

Quantitative Protein Analysis of HCASMCs

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Proteins were extracted from HCASMCs as previously described. In brief, after rinsed with PBS, cells were harvested and proteins were extracted using radioimmunoprecipitation assay buffer. Proteins were quantified by bicinchoninic acid assay after sonication and centrifugation. They were loaded in sodium dodecyl sulfate-polyacrylamide gel electrophoresis gel (6–9%, 5–10 μg per lane). Antibodies Osteopontin (abcam, 1:500), Collagen III (abcam, 1:500), α-SMA (abcam, 1:500), Calponin 1 (abcam, 1:500), HDAC3 (abcam, 1:500), WDR5 (abcam, 1:1000), NADPH (abcam, 1:1000), NOX1 (abcam, 1:1000), GAPDH (abcam, 1:2000) were used in this study. Images were collected by ImageQuant LAS 4000 Imaging Station (GE), the densities of bands were quantified with the ImageQuant TL software (GE).
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2

Osteogenic Differentiation Protein Analysis

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360,000 cells were differentiated in 6 cm dishes for 3 weeks in 1% FCS/OM containing the indicated substances or solvent control. Medium was changed every 2–3 days. Cells were lysed (20 mM Tris pH 7.5, 350 mM NaCl, 1% Triton X-100) for 20 min on ice. After centrifugation, protein concentrations in the supernatants were quantified with the DC protein assay (Bio-Rad). 5x Laemmli buffer (250 mM Tris pH 6.8, 500 mM DTT, 10% SDS, 0.5% Bromophenol blue, 35% Glycerol) was added, and samples were heated to 99 °C for 5 min. 50 µg total protein per lane were separated by SDS-polyacrylamid-gel-electrophoresis and electrotransferred to a PVDF membrane (GE Healthcare) following standard protocols. Blocking was performed with 10% BSA/TBS-T for 2 hours at room temperature. All antibodies were diluted in blocking solution: Osterix (abcam), Cbfa/Runx (MBL), Fibronectin (Santa Cruz), Collagen I (abcam) and Collagen IIa1 (Santa Cruz) 1:500; Osteopontin (abcam) 1:1000. GAPDH (hytest) served as a loading control and was applied at 1:100,000. After incubation with appropriate secondary antibodies (Dianova), SuperSignal West Pico Chemiluminescent Substrate (Thermo Fisher) was used for development in a G:BOX F3 device (Syngene).
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3

Western Blot Analysis of Cellular Signaling

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The cells were collected, washed twice with PBS, and lysed in RIPA buffer containing protease inhibitors. After determining the protein concentration with the BCA Protein Assay Reagent Kit (Pierce), equal amounts of protein were separated on 8% SDS-PAGE, electrically transferred to a PVDF membrane and were blocked with 5% skim milk. The membranes were incubated with IL-17A (1:800; CST, USA), HMGB1 (1:800; CST, USA), Cleaved Caspase-3 (1:800; CST, USA), Osteopontin (1:600; Abcam, USA), p53/p-p53 (1:1,000; CST, USA), Akt/p-Akt (1:1,000; CST, USA), and β-actin (1:2,000; Sigma, USA) antibodies respectively, overnight at 4°C. After washing, the membranes were then incubated with a horseradish peroxidase (HRP)-conjugated anti-rabbit secondary antibody (Southern Biotech) at room temperature for 1 h. The membranes were finally incubated with a West Femto chemiluminescence substrate (Pierce), and the images were visualized and recorded.
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4

Histological Evaluation of Implanted Tissue

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For histology, samples were fixed in 10% formalin for 24 hours, decalcified with Immunocal (Thermo Fisher Scientific), dehydrated in ethanol, embedded in paraffin, and sectioned to 5 μm. Sections were stained for (i) hematoxylin and eosin (H&E), (ii) Alcian Blue with Nuclear Fast Red, (iii) Picosirius Red, and (iv) Movat’s pentachrome. The use of Movat’s pentachrome to evaluate cartilage/bone after implantation is widely reported. The green color indicates the presence of both collagens (staining yellow) and glycosaminoglycans (staining blue by Alcian Blue, which is one of the components of Movat’s stain). All reagents were from Sigma-Aldrich, unless otherwise specified. Immunohistochemistry was performed using the following antibodies: type I collagen, type II collagen, type X collagen, lubricin, and osteopontin (Abcam, Cambridge, MA, USA). Sections were processed according to manufacturer’s instructions. Immunobinding was detected with biotinylated secondary antibodies using the Vectastain ABC kit (Vector Laboratories, Burlingame, CA, USA). Images were acquired using an Olympus FSX-100 microscope (Olympus, Center Valley, PA, USA).
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5

Graphene-Induced Neurogenic and Osteogenic Differentiation

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hMSCs were cultured on test graphene substrates for 24 and 72 hours in the absence or presence of electrical stimulation and then detached with Trypsin (Invitrogen, Carlsbad, CA). After adding complete media to deactivate the Trypsin, cells were collected by centrifugation. Cells were then washed with FACS buffer (PBS without Ca/Mg2+, 1% FBS, 0.1% NaN3) twice and fixed in 1% paraformaldehyde at room temperature for 10 minutes. The cells were then permeabilized using FACS buffer with 0.1% saponin; washed once in FACS buffer; and then centrifuged to a pellet. The supernatant was discarded. Class III β3 tubulin (MAB1637, EMD Millipore, Billerica, MA) and Osteopontin (AB8448, Abcam, Cambridge, MA) were diluted 1:100 in FACS buffer plus 0.1% Triton-X 100 and treated on the cells (50μl /sample). The cells were incubated with primary antibodies for 1 hour at 4°C; washed once in 1 ml FACS buffer plus 0.1% Triton-X 100; and centrifuged; and the supernatant was discarded. Secondary antibodies specific to the primary IgG isotype were diluted in FACS buffer plus 0.1% Triton-X 100 with a final sample volume of 100μl at 1:1000 dilution. The cells were incubated for 60 minutes in the dark at 4°C; washed in FACS buffer plus 0.1% Triton-X 100; and resuspended in 300μl FACS buffer for analysis. Results were analyzed using FlowJo v8.5.2 (FlowJo LLC, Ashland, OR).
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6

Comprehensive Cartilage and Bone Assessment

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Tissues were fixed in 4% paraformaldehyde at 4 °C overnight and if needed, decalcified to completion in 19% EDTA at 23 °C, dehydrated in a graded ethanol series and embedded in paraffin or OCT. Coronal sections (8 μm) were cut and slide-mounted. In all cases the tissues analyzed spanned the region between the first and second molars.
Safranin O/Fast Green, Picrosirius Red, Aniline Blue, and whole-mount Alizarin red/Alcian blue stainings were used to identify bone and cartilage as described50 . Histochemical stainings for Alkaline Phosphatase (ALP) and tartrate resistant acid phosphatase (TRAP) were performed as described50 . Immunohistochemical localization of Ki67 (Thermo Scientific), Osteopontin (abcam), Collgen type X (abcam), and Sox9 (Santa Cruz Biotechnology) was performed as described50 . For X-gal staining, cryosectioned slides were used; fixation, washing, and staining were performed as described50 . TUNEL labeling was performed as described by the manufacturer (Roche). Imaging of stained tissue sections was performed with a Leica DM 5000B fluorescent microscope.
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7

Protein Expression in MC3T3-E1 Osteoblasts

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Total protein was extracted from MC3T3-E1 cells using RIPA lysis buffer (Beyotime Institute of Biotechnology). The protein concentration was determined using a BCA assay kit (Beyotime Institute of Biotechnology). A total of 30 µg protein/well was resolved using 10% SDS-PAGE and transferred to a PVDF membrane. Subsequently, 5% non-fat milk was used to block the membrane at 37˚C for 1 h, followed by incubation at room temperature for 1 h with primary antibodies as follows: Runt-related transcription factor 2 (RUNX2; 1:1,000; cat. no. 12556; Cell Signaling Technology, Inc.), collagen type I α 1 (COL1A1; 1:1,000; cat. no. ab34710; Abcam), osteopontin (1:1,000, cat. no. ab214050; Abcam), osteocalcin (1:1,000, cat. no. ab133612; Abcam), Tbx5 (cat. no. ab259980; Abcam) and GAPDH (1:2,500, cat. no. ab9485; Abcam). The membrane was then incubated with horseradish peroxidase-conjugated anti-rabbit IgG secondary antibody (1:2,000, cat. no. #5127; Cell Signaling Technology, Inc.) at room temperature for 2 h. The bands were visualized by using an enhanced chemiluminescence (ECL) reagent kit (Shanghai Yeasen Biotechnology Co., Ltd.) and semi-quantified with Image J software (Version 1.49; National Institutes of Health).
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8

Western Blot Analysis of Adipogenic Markers

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The BM-MSC treated with induction medium or untreated cells were homogenized in lysis buffer [10 mM Tris-Cl (pH 7.5), 50 mM NaCl, and 1% Triton-X-100 containing phenylmethylsulfonyl fluoride (1 mM) and protease inhibitor cocktail] and centrifuged at 12,000 xg for 15 min at 4°C and the supernatant was estimated for protein content. 100 μg protein of each sample was subjected to 6% SDS-PAGE and electrotransferred onto nitrocellulose membrane. The membranes were incubated with antibodies against adiponectin (Abcam), FABP4 (R&D Systems; http://www.rndsystems.com/), osteopontin (Abcam, http://www.abcam.com/), and β-actin (R&D Systems) followed by incubation with HRP-conjugated corresponding secondary antibodies. The signals were detected using an enhanced chemiluminescence detection system (Amersham Biosciences, http://www.gelifesciences.com/).
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9

Protein Expression Analysis in PH Tissues

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PASMCs or PH tissues were collected and lysed with RIPA lysis buffer to extract total proteins. The protein concentration was quantified using the bicinchoninic acid method. Furthermore, the protein samples were separated by 10% SDS–PAGE and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, MA). After blocking with 5% nonfat milk in tris‐buffered saline with Tween 20 for 1 hour, the membranes were incubated with primary antibodies at 4 °C overnight: Ki67 (1:2000, Abcam, Cambridge, MA), calponin (1:2000, Abcam), SM22α (1:2000, Abcam), osteopontin (1:1000, Abcam), epiregulin (1:1000, Abcam), TCF4 (1:1000, Santa Cruz Biotechnology, CA), and TWIST1 (1:500, Abcam). Then, the membranes were incubated with a horseradish peroxidase conjugated secondary antibody (1:5000, Abcam) for 1 hour at room temperature. Then, the bands were detected with enhanced chemiluminescence reagents (Pharmacia, Piscataway, NJ). Finally, the optical density of the band was quantified using ImageJ. GAPDH was used as an internal control.
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10

Aortic Valve Protein Expression Analysis

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Aortic valves from all groups were lysed (n = 3 in each group) in at least two differnt sets. The tissue was hydrolyzed using Hepes buffer (10Mm Hepes,137mM NaCL,4.6Mm KCL,1.1Mm KH2PO4, 0.6Mm MgSO4, 0.1% EDTA, 0.01% digitonin, 1%SDS) with addition of 10 μm protease inhibitor cocktail and homogenized under ultrasound and then boiled for 5 min. Protein concentrations were measured by Bradford assay. Extracts (20 μg) were loaded onto 5% to 15% SDS-polyacrylamide gels and transferred to membranes, which were blotted overnight for Runx-2, osteopontin (Abcam, Cambridge, UK), osteocalcin (Santa Cruz Biotechnology Inc.), ERK, Akt, JNK, P38, (Cell Signaling). Protein levels were normalized to β-actin. The original western blot gels are provided in S1 Fig.
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