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S6d stereomicroscope

Manufactured by Leica
Sourced in Germany

The Leica S6D stereomicroscope is a high-quality optical instrument designed for detailed observation and analysis. It features a stable, ergonomic design and delivers clear, high-resolution images. The S6D provides variable magnification and is capable of handling a range of specimen sizes and types.

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16 protocols using s6d stereomicroscope

1

Colorectal Tumor Surface Area Analysis

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At the terminal ultrasound, mice were not allowed to return to consciousness and the colons were removed, splayed opened longitudinally, washed with PBS, and secured with pins on the surface of silicone-coated dishes. Photographs were then taken using the Leica S6D stereomicroscope with EC3 digital camera (Leica Microsystems, Buffalo Grove, IL). Tumor surface areas were calculated using Leica LAS v4.8 software Analysis module.
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2

Floral Bud Development Analysis

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The stamen primordia and gynoecium primordia were dissected carefully and photographed using a LEICA S6D stereomicroscope (Leica Microsystems, Wetzlar, Germany). Then, the floral buds, stamen primordia, and gynoecium primordia were fixed in FAA for 24 h for SEM and paraffin sectioning. Some fixed materials were dehydrated in an ethanol series for 20 min per step and dried using CO2 as the exchange agent by an EMITECH K850 critical point dryer (Emitech, Canterbury, British). Then, the samples were coated with gold by an Edwards E-1010 ion sputter golden coater (Hitachi, Tokyo, Japan) and photographed with an FEI Quanta 200 scanning electron microscope (FEI, Eindhoven, Netherlands).
The remaining fixed materials were dehydrated in an ethanol series, transparentized in a xylene series, infiltrated in paraffin, embedded in paraffin wax, and sectioned at an 8 µm thickness with a LEICA RM2145 rotary microtome (Leica Microsystems, Wetzlar, Germany). Finally, the sections were stained with safranin and fast green and photographed with a Zeiss AXIO Axioscope A1 fluorescence microscope (Carl Zeiss, Jena, Germany).
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3

Corneal Lesion Evaluation Protocol

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Upon topical anesthesia, each treated eye was examined with a stereo biomicroscope before application of topical treatment at 30, 54, 78, 100, and 172 h after lesion (also referred to in this study as day 1, 2, 3, 4, and 7, respectively). This was done at each time point to assess corneal inflammation, opacities, and other anterior surface complications (i.e., infection, perforation, etc.). Fluorescein sodium solution (Colircusí Fluoresceína, Alcon Cusí, Barcelona, Spain) was used to evaluate the degree of the corneal epithelial defect. Each animal’s anterior segment was photographed with a Leica S6D stereo microscope (6.3:1 zoom and 15.0× magnification) equipped with a Leica EC3 digital camera (Leica Microsystems, Wetzlar, Germany) with and without fluorescein at each clinical assessment. The defect area was determined by the fluorescein positive remaining area under blue light (1 mm = 240 pixels) using ImageJ 1.45a software (National Institutes of Health, Bethesda, MD, USA). Based on anterior segment visualization of pupil, iris and the presence of corneal vessels with stereo biomicroscopy at each examination time point. The analysis was performed independently by two masked graders.
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4

3D Visualization of Trypan Blue Stained Angle

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Ex vivo procine eyes were perfused through the anterior chamber with 0.4% trypan blue solution (Sigma-Aldrich, St. Louis, MO, USA). Corneo-scleral wedges, containing the chamber angle, were cut out, embedded in glycerin-based Tissue-Tek O.C.T. Compound (Sakura Finetek, Alphen aan den Rijn, Netherlands), snap frozen, and kryosectioned (18 lm thickness). All consecutive sections were collected on superfrost slides (Menzel-Gläser SUPERFROST, ThermoFisher Scientific, Braunschweig, Germany) and photographed on a white surface in reflected light mode with a Leica S6D stereomicroscope and a Leica DFC420 C camera (Leica Microsystems GmbH, Wetzlar, Germany). Images were globally adjusted for contrast and brightness using ImageJ/FIJI. The trypan blue signal was extracted by splitting the RGB channels and subtracting the blue from red channel using the Image calculator plugin. A stack of 23 consecutive trypan blue images was brightness-normalized and registered using the SIFT registration plugin. Noise was reduced by 3D median filtering (2-pixel width), and the stack was rendered in 3D using the Volume viewer plugin.
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5

Stereo Microscope Photography Protocol

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The photographs in fig. S1 were taken using an Olympus PEN-F digital camera mounted to a Leica S6D stereo microscope via a Leica 10445929 0.5× adapter.
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6

Isolation of Rat Dorsal Root Ganglia

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The spinal column was separated from the dorsal side of the rat, and then washed with prechilled PBS solution to remove contaminated blood. The spinal column was trimmed on ice. Under the Leica S6 D stereomicroscope, the spine was divided into two halves along the midline of the abdomen of the spine using ophthalmic scissors. The spinal cord was removed. The DRG was exposed, and the DRG was carefully removed with forceps. The connected nerve fibers were cut off and obtain the tissues of DRG.
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7

Isolation of Dorsal Meninges from Mice

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Mice were euthanized with CO2 and then transcardially perfused with 20 mL 1 x PBS. The skin and muscle were stripped from the outer skull and the skullcap and the adherent meninges dorsal to the ear canal were collected using surgical scissors. Dorsal meningeal collection did not include the direct site impacted by the TBI. After further processing, as detailed below for each individual experiment, meningeal dissection from the skullcap was done under an S6D stereomicroscope (Leica) using Dumont #5 forceps (Fine Science Tools).
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8

Measuring Body Size in Halictus ligatus

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We measured both head width and the intertegular distance as a proxy for overall body size of 240 H. ligatus females. Head width has been examined extensively by researchers as an indicator of caste in eusocial insects, and correlates strongly with overall body size [22 (link)] (Figure 2a). Intertegular distance is defined as the space between wing joints and has been shown to be an indicator of resource availability for larvae and signal foraging range in adults [17 (link)] (Figure 2b). Though each measurement is associated with slightly different information, head width and intertegular distance are tightly correlated (r2 = 0.96; Figure 2). Each individual female was measured twice for accuracy, using the average as the final intertegular measurement. Body measurements were taken using a Leica S6D stereomicroscope with the LAS microscope imaging software version 4.6. To simplify all subsequent statistical analyses, we used solely the head width as a proxy for H. ligatus body size.
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9

Embryo and Endosperm Separation

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Seeds imbibed in double-distilled water or 0.3% SDIC for 2h were separated carefully into embryos and endosperms by using a scalpel and a forceps under a Leica S6D stereomicroscope. For this, seeds with the testa removed were cut slightly at the chalazal endosperm (without damage to the cotyledons) and pressed gently, then the embryo slid out of the endosperm. Subsequently, the excised embryos and endosperms were imbibed again in double-distilled water or 0.3% SDIC until harvest.
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10

Generation and Phenotypic Analysis of Asip1 Transgenic Zebrafish

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Knockout/Transgenic line were obtained by setting up crosses between the CRISPR1-asip1.iim08 mutant line and the transgenic reporter line Tg(Xla.Eef1a1:Cau.Asip1)iim058 (link), which ectopically overexpresses asip1 and produces a dorsal-ventral disruption of pigment pattern phenotype with dorsal skin as pale colored as ventral skin. The offspring were then incrossed to obtain the F2 generation and the asip1 locus was sequenced to confirm the homozygous knockout mutation (asip1K.O.) that carries the dominant asip1 transgene. Adult double transgenic/mutant zebrafish (160 dpf) were anesthetized with MS-222 and photographed. Microscope imaging was carried out on a Leica S6D stereomicroscope equipped with a Leica DFC310FX camera.
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