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9 protocols using phosphate buffered saline (pbs)

1

Flow Cytometric Analysis of B and T Cells

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To analyse the purity and efficiency of the B and Th cell isolation, flow cytometry analysis was performed. In order to identify B and Th cells, we stained for CD3 (total T cells), CD4 (Th cells) and CD19 (B cells) using fluorophore-conjugated antibodies (Table 1). To control for background signalling and to set the gates, isotype control antibodies were used. The cells were stained in staining buffer [PBS (BioConcept), 2% FBS (Gibco)] and subsequently fixed with 4% paraformaldehyde (Sigma) for 15 min. The cells were analysed with the BD FACSCanto ll flow cytometer (BD Bioscience). Data was processed by the BD FACSDiva software (BD Bioscience). The data was analysed using the FlowJo software (Treestar, Inc.).

List of fluorophore-conjugated antibodies

TargetFluorophoreCloneDilutionCompany
CD4FITCOKT41:80eBioscience
CD19PEHIB191:20eBioscience
CD3APCUCHT11:80Biolegend
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2

Electrospinning PEG-DP Scaffolds with IGF-1

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The solutions were prepared 1 to 3 days before electrospinning. For each scaffold, a polyethylene glycol (PEG) (35 kDa, Sigma-Aldrich, Berlin, Germany #81310) solution was prepared by adding 1.5 g of PEG and 3.5 g of chloroform (Sigma–Aldrich, Germany, #132950). The DP solution was produced by adding 0.6 g of DP powder, 3.52 g of chloroform, and 0.88 g of 1,1,1,3,3,3-Hexafluoro-2-propanol (HFP, Sigma-Aldrich, Germany, #105228) into a glass with a screw cap. For the incorporation of recombinant human IGF-1 (PeproTech, Boston, MA, USA, #100-11-100UG), a total amount of 4 µg of IGF-1 dissolved in 400 µL of phosphate-buffered solution (PBS, BioConcept, Allschwil, Switzerland, #3-05F39-I) containing RSA (10 µg/mL IGF-1 and 0.25% RSA in PBS) was added drop-wise to the DP solution, while stirring for five minutes on the magnetic stirrer at 500 rpm. The solution was shortly mixed on the vortex and further emulsified in an ultrasonic bath for 15 min. The emulsion was filled in a 5-mL glass syringe (Huberlab, Aesch, Switzerland,# 3.7102.33) and used immediately for electrospinning. As this protocol for water-in-oil emulsion with IGF-1 was the same as used previously for PDGF-BB incorporation, homogenous distribution of water droplets containing IGF-1 within the DP fibers can be assumed [23 (link)].
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3

Erythrocyte Antibody Interaction Assay

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The EAI assay was performed as described in detail elsewhere [9 (link)]. In brief, erythrocytes obtained from Balb/cJRj mice were purified using a Ficoll gradient (Ficoll-Paque, VWR, Cat#17-1440-02) and were stored for up to 2 weeks in DMEM (Gibco, Cat#61965) containing 10% FCS FCS (Amimed, Cat#2-01F30I) at 4°C prior to use.
Serial dilutions of sera were performed in 96-well U-bottom plates (Greiner, Cat#650161) in DMEM containing 10% FCS. 5x105 cfu B. taylorii expressing GFP were added per well and the plates were incubated at 35°C, 5% CO2 for 1h prior to the addition of 106 red blood cells (multiplicity of infection, MOI = 0.5) in 100 μl DMEM containing 10% FCS. The next day, the supernatant was removed, the red blood cells were fixed using 1% PFA (EMS, Cat#EMS-15710) and 0.2% gluturaldehyde (EMS, Cat#16020) in PBS (BioConcept, Cat#3-05F29-I) for 10 min at 4°C in the dark. After quenching with 2% FCS in PBS, the cells were analysed for GFP signal by Flow Cytometry (BD Canto II using HTS autosampler).
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4

In vivo Salmonella Typhimurium Infection Protocol

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In all experiments, Salmonella Typhimurium SL1344 (S.Tm;SB300; SmR) or the indicated ssaV mutant version (S.TmssaV; M2730; AmpR) were used. [44 (link),45 (link)]. WITS-tags were introduced into S.Tm by P22 phage transduction and subsequent selection on kanamycin. The presence of the correct WITS-tag was confirmed by PCR using tag-specific primers [14 (link),46 (link)]. For in vivo mouse infections, bacteria were grown in lysogeny broth (LB) containing the appropriate antibiotics (50 μg/ml streptomycin (AppliChem); 15 μg/ml chloramphenicol (AppliChem); 50 μg/ml kanamycin (AppliChem); or 100 μg/ml ampicillin (AppliChem)) at 37°C for 12h and sub-cultured in 1:20 LB without antibiotics for 4h. Cells were washed and re-suspended in cold PBS (BioConcept).
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5

Salmonella Typhimurium Infection Protocols

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Salmonella Typhimurium SL1344 (SB300, SmR) was used as WT. The plasmid pM975 (pssaG-GFPmut2) has been previously used.15 (link) For in vivo and tissue culture infections, S.Tm was cultured in LB/0.3 M NaCl (Sigma-Aldrich) with appropriate antibiotics for 12 h before sub-culturing at a 1:20 dilution for 4 h in the same broth without antibiotics. For in vivo infections, the inoculum was reconstituted in PBS (BioConcept), and for tissue culture infections in either DMEM/F12 (Gibco) supplemented with 3% FBS (Gibco), or in complete mouse Intesticult (STEMCELL).
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6

Salmonella Typhimurium Infection Protocol

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In all experiments, Salmonella Typhimurium SL1344 (SB300, SmR) or the indicated mutant versions were used (summarized in Table 1). Desired genetic constructs were transferred into the appropriate background strain using P22 HT105/1 int-201 phage transduction [79 (link)]. Antibiotic resistance cassettes were removed using the heat inducible FLP recombinase encoded on pCP20, if desired [80 (link)]. For in vivo mouse infections, bacteria were grown in lysogeny broth (LB) media containing the appropriate antibiotics (50 μg/ml streptomycin (AppliChem); 15 μg/ml chloramphenicol (AppliChem); 50 μg/ml kanamycin (AppliChem); 100 μg/ml ampicillin (AppliChem)) at 37°C for 12 h and subcultured in 1:20 LB without antibiotics for 4 h. Cells were washed and resuspended in cold PBS (BioConcept).
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7

Antimicrobial Evaluation of Wound Dressings

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To demonstrate the suitability of the 3D biofilm models for antimicrobial testing of wound dressings, the 48 h-old mature biofilms were incubated with different antimicrobial and non-antimicrobial commercial wound dressings for 24 h at 37 °C with 5% CO2. Two bacterial nanocellulose wound dressings (Suprasorb® X, Lohmann&Rauscher, Suprasorb® X + PHMB, Lohmann&Rauscher) and three alginate wound dressings (Suprasorb® A, Lohmann&Rauscher, Suprasorb® A + Ag, Lohmann&Rauscher, Acticoat Absorbent with SILCRYSTTM, Smith&Nephew) were compared. Pieces Of each wound dressing with a diameter of 2.1 cm were prepared in an aseptic manner and fitted onto the models. The wound dressings were carefully pressed on to ensure good contact with the biofilm model. The alginate dressings were additionally loaded with 500 µL PBS (Bioconcept) to ensure moist conditions. Untreated controls were incubated in a humid chamber at 37 °C with 5% CO2.
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8

Bronchoalveolar Lavage Fluid Collection

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BAL fluid was collected at different time points indicated in the figure legends following LPS or NaCl challenge. BAL was performed by injection of a total volume of 2.25 ml of phosphate-buffered saline (PBS, Bioconcept, Allschwil, Switzerland) supplemented with EDTA (0.5 mM, Gibco, Thermo Fisher Scientific, Waltham, MA, United States) through the mouse incised trachea. After centrifugation, BAL supernatant was collected and kept at −20°C until use. BAL cells were analyzed by flow cytometry.
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9

Bone Marrow Cell Transplantation Protocol

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For BMC experiments, recipient mice were irradiated (950 rad) at 6–12 wk of age. Donor BM was isolated, washed in 20 ml ice-cold PBS (BioConcept), and resuspended at a concentration of 107 cells/ml. Recipients were i.v. injected with 5 × 106 donor BM cells. For mixed BMCs, donor cells were counted after isolation and mixed in the respective ratios before injection. Mice were given Borgal (Veterinaria AG) in the drinking water for 3 wk and used for experiments after 6–20 wk of reconstitution.
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