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20 protocols using axiom1 light microscope

1

Hippocampal Cell Counting in Gerbils

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In order to ensure objectivity, all measurements were blindly performed by two observers for each experiment, under the same conditions. The studied tissue sections were selected in a 120-μm interval based on anatomical landmarks corresponding to an anteroposterior position −1.4 ~ −1.8 mm from the stereotaxic atlas of the gerbil brain (27 ), and cell counts were obtained by averaging the counts from 20 sections taken from each animal. NeuN- and F-J B-positive (+) cell structures were observed from 3 layers of the hippocampus proper (strata oriens, pyramidal and radiatum) using an AxioM1 light microscope (Carl Zeiss) equipped with a digital camera (Axiocam; Carl Zeiss) connected to a PC monitor. The number of NeuN- and F-J B+ cells was counted in a 250×250 μm2 area at approximately the center of the CA1 region. Cell counts were obtained by averaging the total cell number from each animal per group.
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2

Cresyl Violet Histochemical Staining

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CV histochemical staining was performed to investigate cellular distribution and morphology. In brief, according to the authors' published method (31 (link)), CV acetate (Sigma-Aldrich; Merck KGaA) was dissolved (1%) in distilled water (DW) and glacial acetic acid was added to this solution. Sections of each group were stained with CV solution and dehydrated with serial ethanol. The sections were examined using an AxioM1 light microscope (Carl Zeiss AG).
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3

Quantifying p63 Immunoreactivity in Ischemic Brain

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To obtain the accurate data for immunoreactivity, the sections from sham- and ischemia-operated young and adult animals were used at designated time points (sham, 1 day, 4 days and 7 days after reperfusion) under the same conditions. According to the above-mentioned western blot analysis method of p63, immunohistochemistry for rabbit anti-p63 (1:200; Abcam, Cambridge, UK) was performed under the same incubation temperature and time. In order to establish the specificity of the immunostaining, a negative control test was carried out with only the secondary antibody without primary antibody. The negative control resulted in the absence of immunoreactivity in any structures.
Eight sections per animal were selected to quantitatively analyze p63 immunoreactivity. Digital images of the hippocampus were captured with an AxioM1 light microscope (Carl Zeiss) equipped with a digital camera (Axiocam, Carl Zeiss, Germany) connected to a PC monitor. According to the method of our previous study (Lee et al., 2014), semi-quantification of the immunostaining intensities was evaluated with digital image analysis software (MetaMorph 4.01, Universal Imaging Corp.). The level of immunoreactivity was scaled as –, ±, + or ++ representing no staining (gray scale value C200), weakly positive (gray scale value 150–199), moderate (gray scale value 100–149), or strong (gray scale value B99), respectively.
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4

Hippocampal Cell Quantification Protocol

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Histopathological, histofluorescence and immunohistochemical data were analyzed following the previous method [22 (link)]. In short, a digital camera (Axiocam, Carl Zeiss, Germany) and a PC-connected AxioM1 light microscope (Carl Zeiss, Göttingen, Germany) were used to take the images of the hippocampus. The cells of the hippocampal CA1 area were counted in a 250 × 250 μm square using an ImageJ threshold analysis software version 1.52a (NIH, USA). The analyzed tissue sections were chosen at the intervals of 150 μm, and cell counts were calculated by averaging the total cell numbers of six sections collected from each group. Finally, data were converted in the percent (%) and measured in the statistical analysis.
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5

Fluoro-Jade B Staining for Neuronal Degeneration

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To examine neuronal damage/death following transient ischemia, F-J B (a high affinity fluorescent marker for the localization of neuronal degeneration) histofluorescence staining was performed, according to a previously published procedure (27 (link)). Briefly, sections were first immersed in a solution containing 1% sodium hydroxide, transferred to a solution of 0.06% potassium permanganate, and subsequently transferred to a 0.0004% Fluoro-Jade B (Histo-chem, Inc., Jefferson, AR, USA) solution. After washing, the sections were placed on a slide warmer (~50°C), and examined using an epifluorescent microscope (Zeiss GmbH, Jena, Germany) with blue (450–490 nm) excitation light and a barrier filter. Digital images of the stained hippocampus were captured with an AxioM1 light microscope equipped with an Axiocam digital camera (both from Zeiss GmbH), connected to a PC monitor.
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6

Quantification of Antioxidant Enzyme Immunoreactivity

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Data were analyzed according to published procedure (26 (link)). Briefly, to quantitatively analyze immunoreactivities of antioxidant enzymes, the immunoreactivity of SOD1, SOD2, CAT and GPX-immunoreactive structures was evaluated on the basis of optical density (OD), which was obtained following the transformation of the mean gray level using the formula: OD = log (256/mean gray level). A portion of the OD of an image file was calibrated in Adobe Photoshop 8.0 (Adobe Systems, Inc., San Jose, CA, USA) and then analyzed as a percentage, with the sham-operated-group designated as 100%, in ImageJ version 1.59 (National Institutes of Health, Bethesda, MD, USA). For cell counting, NeuN- and F-J B-positive cells were imaged from the stratum pyramidale through an AxioM1 light microscope (Zeiss AG) equipped with a digital camera (Axiocam; Zeiss AG) connected to a PC monitor. The mean number of NeuN- and F-J B-positive cells was counted in a 200×200 µm square applied approximately at the center of the CA1 region. Cell counts were obtained by averaging the total cell numbers from each animal per group and analyzing them as a percentage, with the vehicle-sham-group designated as 100%.
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7

Zirconia Surface Analysis Post-Debonding

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After debonding, the zirconia surfaces were evaluated using an Axio M1 light microscope (Carl Zeiss, Oberkochen, Germany) at 40× magnifications to assess the failure mode. The adhesive remnant index (ARI), proposed by Årtun and Bergland [19 (link)], was used to classify each failure as one of four categories: 0) No adhesive left on the ceramic surface; 1) less of half of the adhesive left, 2) more than half of the adhesive left; 3) All the adhesive left on the surface, with distinct impression of the bracket mesh.
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8

Collagen and Metalloproteinase Expression Analysis

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Immunohistochemistry was carried out using antibodies against type I collagen, type III collagen, MMP-1, and MMP-3 to investigate changes of collagen and interstitial collagenase expressions in the sections. The sections were incubated with 0.3% hydrogen peroxide in PBS for 30 min, followed by 10% normal donkey or goat serum (Vector Laboratories, Inc., Burlingame, CA, USA) in 0.05 M PBS for 30 min. The sections were incubated with rabbit anti-type I collagen (diluted 1:400; Abcam, Cambridge, UK), mouse anti-type III collagen (diluted 1:300; Abcam), rabbit anti-MMP-1 (diluted 1:300; Abcam), and mouse anti-MMP-3 (diluted 1:300; Abcam). Thereafter, the tissues were exposed to biotinylated donkey anti-rabbit IgG, goat anti-mouse IgG, and streptavidin peroxidase complex (Vector Laboratories) and visualized with 3,3′-diaminobenzidine tetrachloride (Sigma-Aldrich, Darmstadt, Germany). After dehydration, the sections were mounted with Canada balsam (Kanto, Tokyo, Japan).
We performed quantitative analyses of the immunoreactivities against type I collagen, type III collagen, MMP-1, and MMP-3 using an AxioM1 light microscope (200× magnification; Carl Zeiss, Oberkochen, Germany) equipped with a digital camera (Axiocam) and connected to a PC monitor.
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9

Quantifying Immunoreactive Structures Density

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As previously described (19 (link)), digital images of CB-, CR-, and PV-immunoreactive structures were captured with an AxioM1 light microscope equipped with a digital camera (Axiocam; both from Carl Zeiss AG, Oberkochen, Germany) connected to a PC monitor. The density of each immunoreactive structures was evaluated on the basis of optical density (OD), which was obtained after the transformation of the mean gray level using the formula: OD=log (256/mean gray level). After the background was subtracted, a ratio of the OD of image file was calibrated as % [relative optical density (ROD)] using Adobe Photoshop version 8.0 and NIH Image J software (National Institutes of Health, Bethesda, MD, USA). The mean value of the OD of the control group was designated as 100%, and the ROD of each group was calibrated and expressed as % of the control group.
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10

Quantifying Skin Regeneration and Immune Responses in Wound Healing

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Wound samples (diameter: 7 mm) were sectioned perpendicularly into 10-μm-thick paraffin sections after fixation in 4% polyformaldehyde at 4°C for 24 h. To assess wound tissue, 4–6 sections spanning the wound sample per mice were stained with H&E. Immunofluorescence staining was performed to quantify skin regeneration. The following primary antibodies were used: rabbit polyclonal anti-F4/80 (1:100, Abcam), rabbit polyclonal anti-CD86 (1:200, Abcam), rabbit polyclonal anti-CD206 (1:200, Abcam), rabbit polyclonal anti-Ki67 (1:100, Cell signaling), and rabbit polyclonal anti-CD31 (1:300, Abcam). Immune complexes were visualized with a FITC-conjugated secondary antibody (1:100, Santa Cruz). Nuclei were labeled with DAPI (Sigma) for 15 min. Images were acquired with a Zeiss LSM 710 confocal microscope (Carl Zeiss) or an AxioM1 light microscope (Carl Zeiss). The fluorescence intensity and cell number were acquired and analyzed using Image-pro plus.
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