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36 protocols using quanti blue assay

1

Evaluating TLR8-Mediated NF-κB Activation

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The QUANTI-Blue Assay (Invivogen) allows to verify whether a stimulus specific for human TLR8 receptor occurs through the activation of NF-κB. For this purpose HEK-Blue-TLR8 cells (Invivogen) were incubated with Dotap mixtures of synthetic miRNAs or with Lipo246-derived EVs for 24h, then QUANTI-Blue Assay was performed, according to the manufacturer’s instructions.
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2

Quantifying TLR4 Activation in HEK-Blue

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HEK-Blue hTLR4 cells were seeded at 25,000 cells per well in a 96-well plate and treated with liposomes for 2 hours, followed by 16 hours of LPS stimulation. A Quanti-Blue assay (InvivoGen) was performed according to the manufacturer’s instructions to determine the level of secreted alkaline phosphatase as a reporter for TLR4 activation. Cell viability was assessed as mentioned earlier.
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3

XIST Regulates NF-κB Activation Assay

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THP-1 and THP1-XBlue cells were transfected with human XIST cDNA clone
(5275 bp, Origene) using Lipofectamine 2000 (Invitrogen) according to the
manufacturer’s protocol. NF-κB activation assay studies were
performed using THP1-XBlue with chromosomal integration of a secreted embryonic
alkaline phosphatase reporter construct that is inducible by NF-κB
(InvivoGen). Briefly, 300 × 103 cells were plated in 6-well
plates and stimulated with LPS 24 hours after transfection with XIST. The
supernatants were collected after 24 h and used for QUANTI-Blue assay
(InvivoGen) to detect alkaline phosphatase as recommended by the manufacturer.
To further confirm the effect of XIST on the nuclear migration
of NF-κB p65 and p52 subunits, ELISA based TransAM®method (Active Motif) was used. Briefly, THP-1 cells were transfected with XIST
plasmids followed by LPS stimulation 24 h later. Nuclei were isolated 4 h after
LPS stimulation as mentioned earlier. Equal amounts of nuclear proteins were
used to determine nuclear p65 and p52 according to the manufacturer’s
protocol.
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4

Dual Reporter Assay for Innate Immunity

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THP1-Dual, THP1-Dual MyD88−/−, and THP1-Dual MAVS−/− cells were seeded in 96-well V-bottom culture plates (Corning) at 75,000 cells per well in antibiotic-free RPMI 1640 growth media with 10% HI-FBS for 3 hours before transfection. A549-Dual and A549-Dual RIG-I−/− cells were seeded in 96-well flat-bottom plates (Corning) at 20,000 cells per well in antibiotic-free DMEM with 10% HI-FBS for 24 hours before transfection. Cells were transfected with mRNA (250 ng per well) or 3′ppp-hpRNA (2500 ng per well; InvivoGen), 5′ppp-dsRNA (2500 ng per well; InvivoGen), or 2′3′-cGAMP (2500 ng per well; InvivoGen) or treated with agonists R848 (2500 ng per well; InvivoGen) or TL8-506 (2500 ng per well; InvivoGen) for 24 hours. Luciferase in the supernatant was measured by the QUANTI-Luc assay (InvivoGen), and SEAP was measured by the QUANTI-Blue assay (InvivoGen) on a Synergy H1 plate reader (BioTek).
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5

Inflammatory Response Modulation by HDL NP

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J774-dual cells were grown to confluence in T75 flask in selection antibiotics (5 μg/ml Blasticidin and 100 μg/ml Zeocin). 50,000 cells per well were seeded in 96-well plates. The following day, cells were treated with 1 ng/mL LPS (E.coli, O55:B5) and 25 nM HDL NP or miR-HDL NP. After 48 hours, inflammatory response was assessed by measuring SEAP activity by QUANTI-Blue assay according to manufacturer’s protocol (InvivoGen). Briefly, 20 μL of cell supernatant was moved from each well to a new 96 well plate. 180 μL of pre-warmed QUANTI-Blue solution (InvivoGen) was added to each sample. The absorbance was measured at 655 nm in a microplate plate reader (Synergy 2, BioTek).
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6

Macrophage Activation Assay with Avidin-Silica Beads

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The mouse macrophage cell line RAW-Blue (InvivoGen, Sunnyvale, CA), derived from RAW 264.7, was cultured in media as above, without addition of L929 supplementation. RAW-Blue (1 × 105 cells/ml) were seeded in 96-wells tissue culture plates and inoculated with 3 μm avidin-conjugated silica beads, with or without coating with biotin-PS, for 30 min, and followed by replacing media with or without Pam3CSK4 (50 ng/ml, InvivoGen). Cell activation was determined after 8 h total incubation by the Quanti-Blue assay (InvivoGen), based on optical density measurement of 655 nm.
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7

TLR4 Inhibition in HIV-1-Treated Cells

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TLR4 was inhibited in HIV-1-treated THP1 cells using the TLR4-specific inhibitor CLI-095 (InvivoGen, San Diego, CA), according to the manufacturer's instructions. Briefly, 2.6 μg/ml CLI-095 was added 5 hours prior to PSP treatment. Cells were incubated at 37°C and 5% CO2 during inhibition. After 5 hours, PSP was added at a concentration of 200 μg/ml, following the PSP treatment protocol. TLR4 inhibition was assessed by quantifying cell activation using the QUANTI-Blue assay (InvivoGen, San Diego, CA).
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8

Evaluating IL-1RA and Antibody Therapy in Cell-Based Assays

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40pg/uL human IL-1RA (PeproTech, US) was pre-incubated with 5ng/uL antibody (G4–21 or isotype control. IL-1RA and antibody were applied to HEK-Blue IL-1β cells (InvivoGen, US) for 2 hours and stimulated with 2pg/uL human IL-1β (PeproTech, US) for 36 hours at 37°C. Alternatively, cells were treated with 8–10 nM IL-1RA and commercial monoclonal (mAbs) or polyclonal antibodies (pAbs) at 40–2000nM, or with patient plasma at 1:10 and 1:20 dilutions, and subsequently stimulated with 0.1–1 nM IL-1β for 24 hours. Cells were treated with antibodies in the presence of IL-1α and IL-1RA, IL-1RA alone, or media, and supernatants assayed using the QUANTI-Blue assay (InvivoGen, hkb-il1b, US).
Human A549 lung epithelial cells and MRC-5 lung fibroblasts (ATCC, US) were treated with 10nM IL-1RA and patient plasma and stimulated with 0.5nM human IL-1α (PeproTech, US) for 24 hours at 37°C. RNA was isolated, cDNA prepared, and samples analyzed using TaqMan FAM-conjugated primer sets. Supernatants were collected and assayed for human IL-6 (R&D, US), IL-8 (R&D, US), and G-CSF (R&D, US) via ELISA.
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9

Confirming TLR7/8 Targeting of LNP-TR5

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Example 19

In another experiment, in vitro biological activity of LNP-TR5 and to further confirm targeting of TLR7/8, the following experiment(s) were performed using a RAW-Blue™ Cells and QUANTI-Blue™ assay (InvivoGen, San Diego, Calif.). Briefly, Raw Blue™ cells that express human Toll Like Receptors (TLRs) (with the exception of TLR5) and an NF-κB/AP-1-inducible SEAP (secreted embryonic alkaline phosphatase) reporter gene were used. Stimulation of these cells with TR5 lead to NE-κB activation through TLR7/8 which is measured by detection of SEAP levels. RAW-Blue™ Cells were incubated with TR5 and LNP-TR5 at different concentration. After twenty-four (24) hr. incubation with the compounds, TLR stimulation was assessed by measuring the levels of SEAP optimal density (OD) using a QUANTI-Blue™ assay. ODs were normalized to the control (untreated) group. The result showed that treating the cells with TR5 and LNP-TR5 could cause stimulation of TLR7/8 confirming the mechanism of action of TR5 and its activity in LNP form. (See, FIG. 27).

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10

Confirming TR6 LNP Targeting and Activity

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Example 17

To confirm in vitro biological activity of LNP-TR6 and to further confirm targeting of TLR1/2, the following experiment(s) were performed using a RAW-Blue™ Cells and QUANTI-Blue™ assay (InvivoGen, San Diego, Calif.). Briefly, Raw Blue™ cells that express human Toll Like Receptors (TLRs) (with the exception of TLR5) and an NF-κB/AP-1-inducible SEAP (secreted embryonic alkaline phosphatase) reporter gene were used. Stimulation of these cells with TR6 lead to NF-κB activation through TLR1/2 which is measured by detection of SEAP levels. RAW-Blue™ Cells were incubated with TR6 and LNP-TR6 at different concentration. After twenty-four (24) hr. incubation with the compounds, TLR stimulation was assessed by measuring the levels of SEAP optimal density (OD) using a QUANTI-Blue™ assay. ODs were normalized to the control (untreated) group. The result showed that treating the cells with TR6 and LNP-TR6 could cause stimulation of TLR1/2 confirming the mechanism of action of TR6 and its activity in LNP form, (See, FIG. 25).

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