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23 protocols using ab82419

1

Phillyrin Modulates Oxidative Stress and Apoptosis in ARPE-19 Cells

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Human ARPE-19 cell line was purchased from Beijing Beina Chuanglian Biotechnology Research Institute (Beijing, China). Phillyrin (batch number Z17A8X34077, purity > 98%) was a product of the China Food and Drug Administration (Beijing, China). Dulbecco's Modified Eagle's Medium/nutrient mixture F-12 (DMEM/F-12), fetal bovine serum (FBS), penicillin, and streptomycin solutions were purchased from Corning (NY, USA). Trypsin (0.05%) and phosphate buffered saline (PBS) were produced by Gibco, Invitrogen (Carlsbad, CA, USA). Dimethyl sulfoxide (DMSO), 3-(4,5-dimethylthiazol-2-yl-)-2,5-diphenyltetrazolium bromide (MTT), ML385, N-acetylcysteine (NAC)m and H2O2 solution were purchased from Sigma-Aldrich (St. Louis, MO, USA). Antibodies against Fas (ab82419), cytochrome c (ab90529), cleaved caspase-3 (ab2302), cleaved caspase-9 (ab2324), NQO1 (ab80588), Keap1 (ab118285), Bcl-2 (ab185002), Nrf2 (ab62352), CDK2 (ab32147), cyclin A (ab33911), cyclin E (ab181591), Bax (ab53154), β-actin (ab8226), p21 (ab188224), Histone H3 (ab1791), COX IV (ab16056) p53 (ab241556), pro caspase-3, pro caspase-8, and pro caspase-9 were obtained from Abcam, Cambridge, (MA, USA). Antibodies against p-p53 (9286S), cleaved caspase-8 (9496S), cleaved PARP (5625S), and HO-1 (86806S) were purchased from Cell Signaling Technology, Beverly, (MA, USA).
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2

Western Blot Protein Quantification in Liver

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Protein levels were analyzed through Western blot analyses as described previously [45 (link)]. Briefly, snap-frozen livers were homogenized and diluted. Protein content of homogenates was determined with the DC assay kit (Bio-Rad, Munich, Germany). Samples (30 µg of protein/lane) were subjected to SDS-PAGE (10% gels), and proteins were blotted on nitrocellulose membranes. Glyceraldehyde-3-phosphate dehydrogenase served as an endogenous control (sc166545HRP, Santa Cruz Biotechnology, Santa Cruz, CA). The membranes were blocked and incubated with primary antibodies for either fatty acid synthase (ab82419, Abcam, Berlin, Germany), or sterol regulatory element-binding protein 1c (ab28481, Abcam, Berlin, Germany). Finally, membranes were incubated with the corresponding secondary antibody, and blots were developed using enhanced chemiluminescence. Protein quantification was performed by Multi Gauge V3.0 software (Fujifilm, Tokyo, Japan).
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3

Antibody-based Assays for Autophagy and Apoptosis

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Antibodies and their sources: antibodies against LC3B (2775), CASP3/caspase3 (9662), cleaved CASP3/caspase3 (9661), GFAP (3670), Bcl-2 (2870), and Bax (2772) were obtained from Cell Signaling Technology. Antibodies against ATG5 (ab108327), ATG7 (ab52472), GFAP (ab134436) and Fas (ab82419), NF-κB p65 (ab16502), Phospho-NF-κB p65 (Ser536) (ab86299) were purchased from Abcam. Anti-Cav-1(sc-894) for western blot analysis and immunofluorescence was obtained from Santa Cruz Biotechnology. Anti-β-actin (A1978) was obtained from Sigma. PA (C16:0, saturated fatty acid), CQ, and 3-MA were from Sigma. MG132 was from selleckchem (USA). The adenoviral Cav-1 (Ad-Cav-1) was kindly provided by Dr. Duan-Fang Liao (Hunan University of Traditional Chinese Medicine, Hunan, China).
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4

Western Blot Analysis of Apoptotic Markers

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The neurons were lysed, pulverized, and centrifuged at 15000 r/min for 15 min. Protein samples in the supernatant of neurons were separated by sodium lauryl sulfate-polyacrylamide gels (Beyotime, Shanghai, China) and then transferred onto polyvinylidene fluoride (PVDF) membranes (Millipore, Billerica, MA, USA). After blockage of the PVDF membranes for 1 h, protein samples were incubated with rabbit-anti-mouse primary antibodies against Bcl-2 (1:2000, Catalog No.: ab182858, Abcam, Cambridge, MA, USA), Bax (1:1000, Catalog No.: ab32503; Abcam), Caspase-3 (1:500, Catalog No.: ab13847; Abcam), Caspase-9 (1:2000, Catalog No.: ab202068; Abcam), p53 (1:1000, Catalog No.: ab131442; Abcam), Fas (1:1000, Catalog No.: ab82419; Abcam), NF-κB p65 (1:2000, Catalog No.: ab32536; Abcam), IκBα (1:4000, Catalog No.: ab32518; Abcam), pIκBα (1:1000, Catalog No.: 2859, Cell Signaling Technology, Danvers, MA, USA), IKKβ (1:5000, Catalog No.: ab32135; Abcam) and GAPDH (1:2000, Catalog No.: ab8245; Abcam) at 4℃ overnight and then with goat anti-rabbit IgG II antibodies (1: 5000, Catalog No.: ab6721; Abcam).
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5

Antibody Characterization for Neural Lineage

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The following antibodies with diluent factors were used in this study: chicken anti-GFP (1:1000; catalog no. A10262, Thermo Fisher Scientific), rabbit anti–phospho-S6 ribosomal protein (S235/S236) (1:500; catalog no. 4858, Cell Signaling Technology), rabbit anti–phospho-S6 ribosomal protein (S240/S244) (1:400; catalog no. 5364, Cell Signaling Technology), mouse anti–βIII-tubulin (1:500; catalog no. 4466, Cell Signaling Technology), rabbit anti–phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (1:10,000; catalog no. 4370, Cell Signaling Technology), rabbit anti-SOX2 (1:100; catalog no. ab92494, Abcam), rabbit anti-DCX (1:400; catalog no. ab18723, Abcam), rabbit anti-calretinin (1:100; catalog no. ab702, Abcam), rabbit anti-Fas (1:100; catalog no. ab82419, Abcam), and rat anti-BrdU (1:100; catalog no. ab6326, Abcam).
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6

GMDS Knockdown Impacts Protein Expression

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A549 cells and H1299 cells infected with lentivirus expressing either Scr-shRNA or GMDS-shRNA were cultured for 2 days for protein isolation. In brief, cells were washed with PBS buffer and harvested with lysis buffer (100 mM Tris-HCl, pH = 7.4 l 0.15 M NaCl; 5 mM EDTA, pH = 8.0; 1% Triton X100; 5 mM DTT; 0.1 mM PMSF) to extract total proteins which were quantified with BCA Protein Assay Kit (Pierce, Rockford, IL, USA). To perform western blot analysis, 20 μg protein samples were mixed with loading buffer. Then SDS-PAGE electrophoresis and subsequent PVDF transmembrane were performed (Amersham Biosciences, Pollards Wood, UK). Membrane was blocked with 5% milk dissolved in TBST buffer for 1 h and then incubated with primary antibodies overnight at 4 °C. Primary antibodies used here were as follows: Rabbit anti-GMDS, Novus Biological, NBP1–33424 (1:500); Rabbit anti-CDKN1A, Abcam, ab7960 (1:500); Mouse anti-DDIT3, Abcam, ab11419 (1:1000); Rabbit anti-FAS, Abcam, ab82419 (1:1000); Rabbit anti-JUN, Abcam, ab32137 (1:1000); Rabbit anti-VEGFA, Abcam, ab183100 (1:500); mouse anti-Flag, Sigma, F1804 (1:1000); mouse anti-GAPDH, Santa-Cruz, sc-32,233 (1:2000). After washing with TBST buffer for three times, specific HRP conjugated secondary antibodies from Santa Cruz were added and immunoactivity was detected with ECL-Plus kit (Amersham Biosciences, Pollards Wood, UK).
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7

Immunofluorescence Analysis of Fas and IFN-γ

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Immunofluorescence studies of Fas and IFN-γ skins or HFs were performed using anti-Fas (ab82419, Abcam) and anti-IFN-γ (sc-373727, Santa Cruz Biotech) primary antibodies and corresponding anti-mouse/rabbit secondary antibodies. Nuclei were counterstained with DAPI (Invitrogen). Fluorescence was observed using a FluoView™ FV1000 confocal microscope (Olympus) and images were processed with Photoshop software. Images were post processed using Adobe Photoshop (rotate, crop, brightness, and contrast adjustments only).
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8

Protein Expression Analysis in Retina

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Retinas were homogenized in lysis buffer (20 mM Tris [pH 8.0], 135 mM NaCl, 1% sodium dodecyl sulfate [SDS], and 10% glycerol supplemented with protease inhibitors) and centrifuged at 14,000 rpm for 5 min. The supernatants were collected and diluted in Laemmli sample buffer 5× (4% SDS, 10% glycerol, 0.004% bromophenol blue, 0.1 M dithiothreitol, and 0.125 M Tris, pH 6.8). Extracts were processed using standard sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and Western blotting procedures using precast Mini-PROTEAN TGX gels (Bio-Rad). Equal volumes were loaded on the gels. Antibodies include anti-acetyl p53 K382 (2570, Cell Signaling), anti-acetyl p53 K381 (ab61241, abcam), anti-c-Jun (9165, Cell Signaling), anti-Erk1/2 (9102, Cell Signaling), anti-Fas (ab82419, abcam), anti-JNK (9252, Cell Signaling), anti-p21 (sc-397, Santa Cruz), anti-p53 (MAB1746, R&D systems), anti-Phospho-Erk1/2 T202/Y204 (9255, Cell Signaling), anti-Phospho-JNK T183/Y185 (9255, Cell Signaling), anti-Phospho-c-Jun s63 (2301, Cell Signaling), anti-Phospho-p53 Ser15 (9286, Cell Signaling), anti-PUMA (7467, Cell Signaling), and anti-α-tubulin (T5168, Sigma). Secondary antibodies were obtained from Southern Biotech and Jackson ImmunoResearch. Quantity One software (Bio-Rad) was used for quantification.
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9

Detailed Synthesis and Characterization of DHP1808

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The preparation of DHP1808 was as per our previous reports [38 (link)]. VX-765 and Z-VAD-FMK were obtained from Selleckchem Co. Ltd. (Shanghai, China). The antibodies recognizing FADD (14906-1-AP), Bcl-2 (12789-1-AP), Bax (50599-1-AP), Cytochrome C (10993-1-AP), β-Catenin (51067-2-AP), CDK2 (10122-1-AP), CDK4 (11026-1-AP), CDK6 (14052-1-AP), CyclinB1 (55004-1-AP), p21 (10355-1-AP), E-Cadherin (20874-1-AP), MMP2 (10373-1-AP), MMP9 (10375-1-AP), ZEB1 (21544-1-AP), GAPDH (60004-1-Ig) and β-actin (60008-1-Ig), MNK1 (10136-1-AP), MDM2 (19058-1-AP), and p53 (10442-1-AP) were purchased from Proteintech (Wuhan, China). The antibody recognizing Fas (Ab82419), FasL (Ab68338), Caspase-3 (Ab13847), PARP (Ab32138), N-Cadherin (Ab76011), Met (Ab51067), Phos-Met (Ab68141), ERK1/2 (Ab17942), Phos-ERK1/2 (Ab76299), JNK (Ab179461), Phos-JNK (Ab124956), phos-MNK1 (ab109102), Caspase-1 (ab179515), and GSDMD (ab215203) were purchased from Abcam (Cambridge, MA, USA). The antibody recognizing Bad (9239), Bim (2933), Caspase-8 (9746), Caspase-9 (9508), p27 (3686), Cdc37 (10218-1-AP), cRaf (2330), Phos-cRaf (2330), BRaf (2330), Phos-bRaf (2330), c-Myc (5605), p90RSK (9326), Phos-p90RSK (9326), Hsp90 (4877), EGFR (2232), Phos-EGFR (4407), Akt1 (4691), phos-Akt308 (4056), and phos-Akt473 (4060) were purchased from Cell Signaling Technology (Danvers, MA, USA).
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10

Immunohistochemical Analysis of Fas and FasL

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The spleen was fixed in 10 % neutral formaldehyde and embedded in paraffin wax. The 4-μm-thick sections were dewaxed in xylene and rehydrated by taking through a graded series of ethanol. The endogenous peroxidase activity was blocked with 3 % hydrogen peroxide for 15 min. Sections were incubated with rabbit anti-Fas antibody (ab82419, Abcam Ltd, Hong Kong, 1:100 dilution) or rabbit anti-FasL antibody (sc-834, Santa Cruz Biotechnology, USA, 1:200 dilution) overnight at 4°C and then incubated with goat polyclonal secondary antibody to rabbit IgG-H&L-HRP (ab6721, Abcam Ltd, Hong Kong, 1:500 dilution) for 30 min at 37 °C. Negative controls were incubated with normal rabbit serum instead of the first antibody. Finally, sections were stained by using a 3,3'-diaminobenzidine (DAB) kit (Maixin Biotechnology Company, China) and counterstained with hematoxylin, dehydrated through a graded series of ethanol solutions, cleared with xylene, and mounted with coverslips. The analysis was performed using a scoring system as described previously [35 (link)]. All the slides were scored by two pathologists who were blinded to the pathology and experimental protocol.
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