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2 protocols using uqcrq

1

Protein Expression Analysis Protocol

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Lysates were made using TNN lysis buffer (50 mM Tris-Cl, 250 mM NaCl, 5 mM EDTA, and 0.5% NP-40 supplemented with protease inhibitor). 60 μg of protein was loaded onto SDS-PAGE gels and then transferred onto Immobilon-FL transfer membranes (IPFL00010; Millipore). The antibodies used were MYC, SRSF1, RBM42, PCBP2, UQCRQ, ATP6V0B, COX5A, EIF4E, AKT1, and NDUFA1 (Cell Signaling Technology) and β-actin (A5316; Sigma-Aldrich).
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2

Quantitative Proteomic and Transcriptomic Analysis of Metabolic Pathways

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Western blotting and qPCR were conducted as previously described (59 (link)). Anti-CDK7 (MO1), CDK9 (C12F7), PRMT5 (D5P2T), DHODH (E9X8R), adolase A (D73H4), hexokinase I (C35C4), hexokinase II (C64G5), PFKFB3 (D7H4Q), enolase-1, enolase-2 (E2H9X), PKM1 (D30G6), PKM2 (D78A4), LDHA (C4B5), glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (D16H11), PFAS, SDHA, UQCRQ, and GMPS antibodies were purchased from Cell Signaling Technologies (Danvers, MA). GART and PAICS antibodies were obtained from Abcam. TaqMan primers for PRMT5 (Hs01047345), DHODH (Hs00361406), CDK9 (Hs00977896), CDK7 (Hs00361486), BCL2 (Hs00608023), MCL1 (Hs06626047_g1), Myc (Hs00905030), ALDOA (Aldolase A) (Hs00605108), ENO1 (enolase 1) (Hs00361415), PKM (Hs00761782), FH (Hs00264683), UQCRQ (Hs00429571), GART (Hs00894582), PAICS (Hs00935017), FDFT1(Hs00926054), HMGCS1 (Hs00940429), PTK2 (Hs01056457), KRT18 (keratin 18) (Hs01920599), SLC38A2 (Hs01089954), and HK1 (Hs00175976) were obtained from Thermo Fisher Scientific (Waltham, MA).
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