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3 protocols using hnrnp f

1

Western Blot and Immunofluorescence Antibodies

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Antibodies used for Western blotting and immunofluorescence assays were as follows: hnRNPM (OriGene), hnRNPF (Santa Cruz Biotechnology, Inc.), hnRNPH1/H2 (Santa Cruz Biotechnology, Inc.), p-Smad3 (Cell Signaling), Smad3 (Cell Signaling), CD44 (R&D Systems and Santa Cruz Biotechnology, Inc.), E-cadherin (Cell Signaling Technology), γ-catenin (Cell Signaling Technology), occludin (Santa Cruz Biotechnology, Inc.), N-cadherin (BD), vimentin (NEOMarkers), β-actin (Sigma-Aldrich), and GAPDH (Millipore). The ESRP1 antibody was a gift from Dr. R. Carstens (University of Pennsylvania).
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2

Western Blot Analysis of Cellular Proteins

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Cells were lysed with SDS sample buffer (50 mM Tris at pH 7.4, 100 mM NaCl, 1% Triton X-100, 0.1% SDS, 1% sodium deoxycholate, 1× proteinase inhibitor cocktail [Biotools]), resolved by SDS-PAGE, transferred to nitrocellulose membranes, and incubated with primary antibodies detecting CDH1 (1:1000; Cell Signaling), hnRNP H1 (1:1000; Bethyl Laboratories), hnRNP F (1:1500; Santa Cruz Biotechnology), GAPDH (1:20,000; Sigma), or ACTB (1:30,000; Sigma) overnight at 4°C. Secondary antibodies HRP-conjugated anti-mouse and anti-rabbit IgG (Sigma) were used at 1:10,000 for 2 h at room temperature. Following washes with PBST (1× PBS, 0.1% Tween-20), ECL-Prime (GE Healthcare) was used to visualize the chemiluminescence signal, and ImageJ software was used for quantification.
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3

Antibody Sourcing and Characterization

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Antibodies were obtained commercially. From Santa Cruz Biotechnology: anti-AKAP95 (sc-10766, 1:500); anti-DDX5 (sc-32858, 1:500); anti-hnRNP M (sc-20002, 1:500); hnRNP F (sc-10045, 1:500); anti-His (sc-803, 1:500); and anti-RNA Pol II (sc-899, 1:500). From others: Anti-hnRNP A1 (Novus Biologicals, NB100–672, 1:2,000), anti-Pol II (Covance, MPY-127R for clones 8WG16, H14 and H5, 1:500), anti-hnRNP H (Bethyl Laboratories, A300–511A, 1:2,000); DDX17 (Bethyl Laboratories, A300–509A, 1:2,000); anti-HA (Abcam, ab9110, 1:1,000); anti-GAPDH (Chemicon, MAB374, 1:5,000); anti-FLAG (Sigma, A8592, 1:1,000); anti-FLAG (Sigma, A2220, M2 beads); and anti-MBP (New England BioLabs, E8032S, 1:5,000).
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