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12 protocols using vegfr1

1

Placental Biomarker Immunofluorescence Analysis

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Placental section slides were prepared by the Northern Ireland Biobank (38 (link)) using fresh tissue before being subjected to immunofluorescence staining for FKBPL (Cat. no.: 10060-1-AP; Proteintech, UK), SIRT-1 (Cat. no.: ab110304; Abcam, UK), PlGF (Cat. no.: ab180734, Abcam, UK) and VEGF-R1 (Cat. no.: AF321, R&D systems, USA). Tissue slides were imaged using a Leica DMi8 fluorescence inverted microscope using the same magnification (20x) and exposure. Analysis was performed using Image J software (NIH, US) by selecting six random fields of view per section and measuring the intensity, with the assessor blind to patient group. Protein expression was quantified as previously described (39 (link)).
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2

Angiogenic Differentiation of Cells

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In order to induce cells through the angiogenic lineage they were cultured with and without Refeed® in DMEM containing 2% FBS with the addition of 50 ng/ml vascular endothelial growth factor (VEGF; Sigma-Aldrich Co., St. Louis, MO, USA) for 6 days, changing the medium every 2 days. As a negative control of angiogenesis, cells with and without Refeed® were cultured in standard medium (DMEM with 10% FBS). Then cells were fixed for flow cytometric analysis and the expression of FLT1 (VEGFR1; R&D system), KDR (VEGFR2), and von Willebrand factor (vWF; Abcam) was measured.
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3

Characterizing Endothelial Cell Markers

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hTERT PTEC were detached from plates with a non-enzymatic cell dissociation solution (Sigma-Aldrich), washed and stained (30 min at 4 °C) with the following fluorescein isothiocyanate (FITC)-, phycoerythrin (PE)-, or allophycocyanin (APC)-conjugated antibodies: CD31 (BD Bioscience, Franklin Lakes, NJ, USA), CD105 (from MiltenyiBiotec, Bergisch Gladbach, Germany), VEGFR1 (R&D Systems, Minneapolis, MN, USA). Isotypes (all from MiltenyiBiotec, Bergisch Gladbach, Germany) were used as negative controls. Cells were subjected to cytofluorimetric analysis (FACScan Becton Dickinson, Franklin Lakes, NJ, USA) every other passage.
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4

Characterization of Endothelial Progenitor Cells

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Endothelial progenitor cells were washed with cold PBS and were resuspended in PBS with FcR blocking reagent (MACS), 0.2% FBS, and 2 mmol/L EDTA at 4°C for 30 min. They were stained with monoclonal antibodies specific for the following surface antigens: CD34 (Becton Dickinson, San Jose, CA), CD51/61 (integrin αv/β3; Becton Dickinson), CD54 (ICAM1; Becton Dickinson), CD106 (VCAM1; Becton Dickinson), CD117 (c‐Kit; MACS), CD133 (MACS), CD144 (VE‐cadherin; Beckman Coulter, Brea, CA), CD202b (Tie2; R&D), CD309 (VEGF‐R2; R&D), and VEGF‐R1 (R&D). After incubation at 4°C for 30 min they were washed twice and were analyzed using two‐color flow cytometry.
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5

Phage Display Screening for Antigen Binders

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BCscFv library was constructed (Fig. S1, Table S2) and characterized (Fig. S2).
The antigens, ubiquitin (R&D Systems), hemoglobin (Sigma), VEGFA (Sino Biological), VEGFR1 (R&D Systems), and CD44 (R&D Systems), were incubated in 96-well Nunc Maxisorp plates (Thermo Scientific) at 4 °C for 16–20 h for immobilization. For stringent phage selections, the amount of antigen for immobilization was gradually decreased: first round: 5 µg/mL, second round: 2.5 µg/mL, and third round: 1.25 μg/mL in PBS (100 µL). After each well was rinsed with PBST (PBS containing 0.05% Tween-20), non-specific binding sites were blocked with alternating proteins (300 μL) to prevent the emergence of phage that bind the blocking protein for 2 h (first round: 0.5% BSA in PBS, second round: 0.5% ovalbumin in PBS, and third round: 0.5% casein in PBS). The plate was rinsed with PBST, and phages in blocking buffer (100 μL, 1013 CFU/mL) were added to the plates for affinity selection and incubated for 2 h at room temperature. The wells were rinsed three times with PBST in the first and second rounds of screening and ten times in the third round of screening. The remaining scFv-expressing phages were eluted by a treatment with trypsin (100 μL/well, 1 mg/mL in PBS) for 10 min. The eluted phage were collected and stored at 4 °C for titration or amplification.
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6

Receptor Binding Assay Using ELISA

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The recombinant extracellular domains of the receptors DR5 (100 ng/well), VEGFR1 or VEGFR2 (50 ng/well) (R&D Systems, Minneapolis, MN, USA) were immobilized on ELISA plates overnight at 4 °C in 0.1 M carbonate–bicarbonate buffer (pH 9.4). The plates were washed three times with PBST (phosphate-buffered saline + 0.05% Tween), and wells were blocked by 2% BSA in PBST for 1 h at 37 °C. After blocking, dilutions of DR5-B, HRH–DR5-B or SRH–DR5-B (in 3 replicates) at concentrations from 0.032 to 2500 nM were added, and the plates were incubated for 1 h at 37 °C. Captured ligands were detected by subsequent incubation with monoclonal antibodies to TRAIL (MAB375, R&D Systems, Minneapolis, MN, USA) and anti-mouse polyclonal goat IgG conjugated with horseradish peroxidase (HAF007, R&D Systems). Unbound antibodies were washed 3 times with a PBST buffer, and color was developed by OPD (o-phenylenediamine dihydrochloride) colorimetric substrate. After 15 min of incubation with the substrate at 37 °C, the reaction was stopped by a 1 N H2SO4 solution. The optical density was determined at 450 nm by iMark reader (Bio-Rad, Hercules, CA, USA). Dissociation constant (KD) values were calculated by GraphPad Prism 8 software (GraphPad Software Inc., San Diego, CA, USA), using the nonlinear regression option in the XY analysis section.
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7

Quantifying Angiogenic Factors in Cell Cultures

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Cultured media were collected and centrifuged at 1,200 g for 5 min. Media were supplemented with 17.5 μg mL−1 phenyl-methylsulfonylfluoride, 1 μg mL−1 pepstatin A, 2 μg mL−1 aprotinin and 50 μg mL−1 bacitracin, and stored at −80 °C. Human specific ELISA kits were used to measure angiopoietin-1, MCP-1, FGF-2, EGF, IGF-1, VEGF, VEGFR-1, PICP and IL-6 (all from R&D Systems), OPG (Bender MedSystems GmbH), RANKL (Biomedica Gruppe) and M-CSF (Abcam). For TGF-β1 detection, cell layers were washed with PBS and extracted with 5 × 10−2 M Tris-HCl pH 8.0, 5 × 10−1 M NaCl and 1% Triton X-100, supplemented with protease inhibitors as above described. The amount of TGF-β1 in the extracts was determined using a human specific ELISA (RayBiotech) and the data were normalized to the total protein amount in cell layers, as determined by a Bradford-based protein assay (Bio-Rad Laboratories Inc.).
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8

Phage Display Library Construction and Screening

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BCscFv library was constructed (Figure S1, Table S2) and characterized (Figure S2).
The antigens, ubiquitin (R&D Systems), hemoglobin (Sigma), VEGFA (Sino Biological), VEGFR1 (R&D Systems), and CD44 (R&D Systems), were incubated in 96-well Nunc Maxisorp plates (Thermo Scientific) at 4 °C for 16 to 20 h for immobilization. For stringent phage selections, the amount of antigen for immobilization was gradually decreased: first round: 5 µg/mL, second round: 2.5 µg/mL, and third round: 1.25 µg/mL in PBS (100 µL). After each well was rinsed with PBST (PBS containing 0.05% Tween-20), non-specific binding sites were blocked with alternating proteins (300 µL) to prevent the emergence of phage that bind the blocking protein for 2 h (first round: 0.5% BSA in PBS, second round: 0.5% ovalbumin in PBS, and third round: 0.5% casein in PBS). The plate was rinsed with PBST, and phages in blocking buffer (100 µL, 1013 CFU/mL) were added to the plates for affinity selection and incubated for 2 h at room temperature. The wells were rinsed three times with PBST in the first and second rounds of screening and ten times in the third round of screening. The remaining scFv-expressing phages were eluted by a treatment with trypsin (100 µL/well, 1 mg/mL in PBS) for 10 min. The eluted phage were collected and stored at 4 °C for titration or amplification.
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9

VEGFR Binding Assay Protocol

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A MSD standard bind 96-well plate was coated with 0.25 μg/ml VEGFR1 or VEGFR2 (R&D Systems) in bicarbonate buffer, and sealed plates were incubated overnight at 4 °C. The following day plates were washed with Tris wash buffer and blocked with 3% BSA in PBS for 1 h at room temperature. Plates were washed as described above before the addition of anti-VEGF molecule and incubated at room temperature for 10 min before the addition of VEGF-165 (R&D Systems). The anti-VEGF molecules and VEGF were diluted in 0.1% BSA in PBS. The final VEGF concentration used was 10 ng/ml. No VEGF and VEGF-only wells were also included as controls on all plates. Plates were incubated at room temperature for 2 h before being washed again before the addition of the detection reagent (goat anti-human VEGF biotinylated antibody; R&D Systems) at 0.25 μg/ml in 1% BSA in PBS and incubated at room temperature for 1 h. Plates were washed again before the addition of the streptavidin sulfo-TAG (MSD) at 2 μg/ml in 1% BSA in PBS and incubated at room temperature for 30 min. Plates were washed, and 2× Read Buffer T was added before being read on a SECTOR 6000 MSD imager. GraphPad Prism was used to fit curves using a sigmoidal dose response (variable slope) model and to calculate the IC50 values (with S.D. calculated over the mean) from n = 2–11 experiments.
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10

Multiparametric Characterization of MSCs

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A four-color FC analysis was performed on FC500 analyzer (Beckman Coulter) to characterize MSCs and S-MSCs at day 28: FITC-conjugated CD105 (endoglin), CD31 (PECAM1) antibodies and PE-conjugated CD90 (Thy-1), CD140a (Platelet-derived growth factor receptor alpha, PDGF RA), CD140b (Platelet-derived growth factor receptor beta, PDGF RB), CD144 (Ve-Cadherin, CDH5), VEGF R1 (Vascular endothelial growth factor receptor 1, FLT1) antibodies and PE-Cy5-conjugated HLA-DR (human leukocyte antigen-D related), CD34, CD45, CD11b (integrin alpha M), CD146 (Melanoma adhesion molecule, MCAM), CD184 (CXCR4), CD106 (VCAM1) antibodies and PE-Cy7 conjugated CD73 (5′ nucleotidase) and VEGF R2 (KDR, CD309) antibodies. Mouse anti-Human CD105, CD90, CD73, HLA-DR, CD140a, CD31, CD184, CD106 were obtained from BD Biosciences (Le Pont de Claix, France), CD34, CD45, CD11b, CD146, VEGFR2 from Beckman Coulter, CD140a, VEGFR1 from R&D Systems Inc (Minneapolis, USA) and CD144 from Santa-Cruz Biotechnology inc SCBT (Dallas, USA). The isotype-matched mouse IgG1-FITC, IgG1-PE, IgG1-PCy5 and IgG1-PCy7 were used as negative controls. Acquisition and processing data from 7,000 events were analysed using Kaluza software.
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