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51 protocols using isolectin gs ib4

1

Retinal Vascular Imaging Protocol

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Mouse globes were enucleated and the retinas were carefully dissected out. The retinas were blocked with blocking buffer (1× PBS with 3% (vol/vol) normal donkey serum and 0.3% (vol/vol) Triton X-100) and then incubated with isolectin GS-IB4 (1:200; Invitrogen, Carlsbad, CA, USA) for 48 h at 4°C. Retinas were then washed with 1× PBS and flat-mounted onto microscope slides for confocal laser scanning microscopy.
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2

Myocardial Infarction Immune Cell Analysis

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Twenty-four hours after I/R, mice were sacrificed and hearts were perfused with cold PBS, fixed in 4% PFA for 24 hours, and then embedded in the OCT compound (Sakura Finetek). Cryosections (10 µm thick) were cut and stained with primary antibodies against Ly6G(BioLegend; catalog no. 108401) and biotin-conjugated IsolectinGS-IB4 (Invitrogen; catalog no. I21414). Cy3-conjugated streptavidin (Invitrogen) and fluorescein isothiocyanate–conjugated anti-rat antibody were used as secondary reagents. Images were visualized by confocal microscopy using an Olympus FluoView FV10i.
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3

Quantifying Retinal Vascular Changes

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After being anesthetized, the eyes were enucleated and fixed in 4% paraformaldehyde solution for 2 h. The retinas were dissected, isolated intact, and fixed in 4% PFA for another 10 min. Each retina was evenly cut into four pieces to form a “four-leaf clover” shape, with the optic papilla as the center. The tissue was soaked in 0.3% Triton X-100 for 20 min and blocked with 10% fetal calf serum. Next, isolectin GS-IB4 (Invitrogen, I21414) (2 μM) was added, and the retina was incubated overnight at 4°C. The retina was rinsed three times with phosphate-buffered saline (PBS) and coverslipped. The relative area of vessel obliteration and fluorescence leakage was quantified using a confocal laser fluorescence microscope (LSM 510 META, Carl Zeiss, Germany) that was linked to cellSens Standard 1.9 software.
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4

Quantifying Retinal Vascular Alterations

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Eyes were fixed in 4% paraformaldehyde (Sigma) for 2 h at 4°C. Retinas were isolated under an operating microscope, and were then permeabilized by incubating each retina with 500μl of 1X PBS containing 0.5 % Triton X-100 (Sigma) at 4°C overnight. After three washes with 1X PBS, the retinas were stained with 10μg/mL isolectin GS-IB4 (Invitrogen) in a light-proof container at 4°C overnight. The retinas were then wholly mounted, and images were taken under Leica TCS SP8 confocal microscope. Images were analyzed using Adobe Photoshop CS5 as previously described [25 (link)]. Amount of avascular or neovascular area = number of pixels in the avascular or neovascular area / number of pixels in the total retina.
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5

Immunofluorescence Staining of Cell Cultures

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DAPI (4′, 6′-diamidino-2-phenlyindole, #D1306), Isolectin GS-IB4 (#I21411, #I21412) and 10X PBS (#70011) were purchased from Invitrogen (Carlsbad, CA). Sodium borohydride (#480886), 95% paraformaldehyde (#441244), ethanol (#E7148), Triton X-100 (#T8532) and Sudan Black B (#199664) were purchased from Sigma-Aldrich (St. Louis, MO). Chicken anti-GFP (1:2000; #AB13970) was purchased from Abcam (Cambridge, MA). Rabbit polyclonal anti-dsRed (1:1000; #632496) was purchased from Clontech (Mountain View, CA). Guinea pig anti-A2A adenosine receptor (1:4000; A2A-GP-Af1000) was purchased from Frontier (Hokkaido, Japan). Rabbit anti-phospho-ERK (1:1000; #9101) was purchased from Cell Signaling (Beverly, MA). Rabbit anti-Iba (1:1000; #019-19741) was purchased from Wako (Osaka, Japan). AF488 goat anti-chicken (1:1000; #A11039), AF488 goat anti-guinea pig (1:1000; #A11073) and AF568 goat anti-rabbit (1:1000; #A11011) were purchased from Invitrogen.
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6

Immunohistochemical Analysis of Tumor Samples

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After the mice were euthanized, the tumors were excised and fixed in formalin, embedded in paraffin, cut into 5-μm sections, dewaxed and hydrated, and stained with hematoxylin and eosin using a standard technique. The IHC staining procedures were as follows: Tissue sections were incubated for 10 min at room temperature in 3% hydrogen peroxide to block endogenous peroxidase. Slides were blocked and incubated with the following primary antibodies: anti-EGFR (Nichirei Biosciences), pEGFR (Cell Signaling Technology), pERK (Thr202/Tyr204) (Cell Signaling Technology), pAKT (Cell Signaling Technology), endomucin (eBioscience), and CD34 (Abcam). The slides were subsequently incubated with polymer-HRP anti-rabbit (Dako) or anti-mouse (Dako) secondary antibodies. Tissue staining was visualized using 4′,6-diamidino-2-phenylindole (DAPI). The slides were then counterstained with hematoxylin, dehydrated, and mounted. The coimmunofluorescence staining procedure for isolectin GS-IB4 (594) (Invitrogen) was as follows: After the same preprocessing for IHC staining as described above, slides were incubated with primary antibody against isolectin GS-IB4 (594) and subsequently incubated with the appropriate fluorescence-conjugated secondary antibodies; DAPI counterstaining was used to identify the nuclei.
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7

Immunohistochemistry Protocol for Brain Vasculature

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Antibodies used in this study were as follows: chicken anti-beta-galactosidase (Abcam 9361); rabbit anti-GLUT-1 (Thermo Scientific RB-9052-P0); rabbit anti-NG2 (Millipore AB5320); rat anti-mouse CD102/ICAM2 (BD Biosciences 553326); rat anti-PLVAP/ MECA-32 (BD Biosciences 553849); mouse anti-Claudin-5, Alexa 488 conjugate (Invitrogen 352588), and Texas Red streptavidin (Vector Laboratories SA-5006). AlexFluor-labeled secondary antibodies and GS lectin (Isolectin GS-IB4) were from Invitrogen. Primary antibodies were used at 1:200 to 1:500 dilution.
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8

Quantitative Analysis of Lipid Droplets and Apoptosis in BAT

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BAT was harvested, fixed overnight in 10% formalin, embedded in paraffin and sectioned for hematoxylin and eosin (HE) or immunofluorescence staining. The number of large lipid droplets (defined as droplets with a surface area >250 μm2) in the ×400 field was counted. For immunofluorescence, the sections were deparaffinized and retrieved with 10mM citrate buffer (pH 6.0). As the first antibody, anti-SIRT1 (Sigma-Aldrich, 07–131) was used, together with isolectin GS-IB4 (IB4, derived from Griffonia simplicifolia-biotin-XX conjugate) for staining of capillaries (Invitrogen, I21414), and Hoechst (Life Technologies, 33258). Secondary antibodies were Cy5 Goat anti-rabbit IgG (H + L; Life Technologies, A10523) for anti-SIRT1, BB515 streptavidin (BD horizon, 564453), and Cy5-streptavidin conjugate (Invitrogen, 43–4316) for IB4. TUNEL staining was performed to assess apoptosis. The sections were stained according to the instructions of the In situ Apoptosis Detection Kit (TaKaRa, MK500). HE-stained images were captured with a Biorevo microscope system (Keyence Co.), and immunofluorescence sections were assessed by confocal microscopy (NIKON, C2). ImageJ was used to quantify image analysis (Schneider et al., 2012 (link)).
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9

Retinal Vasculature Imaging and Analysis

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After fixing whole eyes in 4% paraformaldehyde in PBS at 4 °C for 1 hour, the retina was dissected and flat-mounted, and fixed under coverslips overnight in cold paraformaldehyde (Soto et al., 2008 (link)). After graded series of washes in PBS, 33, 66 and 100% methanol, the retina was stored at −20° C in 100% methanol. The reverse graded series of methanol was used to rehydrate the retinas prior to antibody labeling. After blocking in 5% normal donkey serum in PBS with 0.3% TritonX-100, retinas were incubated for 24hrs at 4° C with 1:250 Alexa Fluor-647 conjugated Isolectin-GS-IB4 from Griffonia simplicifolia (Invitrogen I32450, lot 1874784). After additional washes in PBS, the retina was mounted on a slide using Aqua Poly/Mount (Polysciences).
The flat-mounted retina was imaged in their entirety using a 20× Plan-Apochromat 0.8NA objective using a 200M Zeiss microscope controlled by IPlab software. At each position, multiple images were acquired at different z-positions for the whole retina thickness for the IB4 signal. After making maximum intensity projections for each channel, retina mosaics were created.
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10

Immunofluorescence Staining of Tissue Sections

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Frozen and/or paraffin sections were used for immunofluorescence staining as described previously 10 (link)13 (link) using the following primary antibodies: WT-1 (sc-192Santa Cruz Biotechnology), CD31 (BDB550274, BD Biosciences), cleaved PARP (#ab32064, Abcam), cleaved Caspase-3 (#9664, Abcam), 8-oxoG monoclonal antibody (N45.1; Japan Institute for the Control of Aging), LRG1 (13224-1-AP, Proteintech), GPR56 (MABN310, Millipore), and ZFP57 (ab45341, Abcam). Isolectin GS-IB4 (121413, Invitrogen) was also used to detect endothelial cells. Fluorescence images were acquired using the Axioplan 2 IE microscope (Zeiss).
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