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8 protocols using bay 11 7085

1

HGF and Cytokine Secretion Regulation

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Cells were seeded in 24-well plates at a density of 20,000 cells/well. To generate conditioned medium, cells were incubated in 500 μl Opti-MEM (Gibco) media for 24 or 48 hours in the presence of absence of HGF (Peprotech), c-Met kinase inhibitor II (Calbiochem), SN50 (Calbiochem) or Bay 11–7085 (Enzo Life Sciences cat. no. BML-EI279-010). Cells were treated with TGF-β for 24 or 48 hours in Opti-MEM containing 10% FBS. Murine HGF expression was analyzed in 100 μl of conditioned medium according to manufacturer protocol (R&D Systems). Murine or human CXCL1 expression was analyzed in 20 μl conditioned medium diluted in 80 μl Opti-MEM media, according manufacturer’s instructions (Peprotech). Reactions were catalyzed using tetramethylbenzidine substrate (Thermo Scientific). Reaction was stopped using 50 μl/well of 2N HCl, and read at A450nm using a Biotek plate reader.
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2

NF-κB Regulation of 5-FU Cytotoxicity

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Sa3 cells were cultured on sterile 18-mm round coverslips. After reaching 70−80% confluence, the cells were treated with 5 mg/mL 5-FU for 1 or 3 h. For immunocytochemistry, the cells were fixed with 3.0% formalin for 30 min and then permeabilized with 0.1% Triton X-100 in PBS for 2 min at 4°C. After blocking of nonspecific binding sites, cells were incubated with anti-NF-κB antibody (sc-372) (Santa cruz) diluted 1∶200 in 4% BSA in PBS overnight at 4°C, followed by Alexa 546-conjugated anti-rabbit IgG (Molecular Probes, Eugene, OR, cat no A11010), diluted 1∶500 in 4% BSA in PBS for 60 min at ambient temperature. The samples were mounted and examined under a microscope equipped with epifluorescence illumination (ECLIPSE Ti-U, Nikon). To exmamine the effect of NF-κB on 5-FU-suppressed cellular viability, Sa3 cells incubated with NF-κB inhibitors, 5 µM BAY 11-7085 (Enzo Life Sciences, cat no EI-279) and 200 µM Caffeic acid phenethyl ester (CAPE) (Calbiochem, San Diego, CA, cat no 211200) for 1 h. Then cells were treated with 5 mg/mL 5-FU for 24 h and cellular viability was mesured by WST-8 assay.
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3

Three-dimensional Growth Assay for Spheroid Analysis

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Three-dimensional growth assays were performed as described with the substitution of agarose to prevent cell adhesion [13] (link). Briefly, 2 × 104 cells were plated on top of 1.0% agarose in 6-well plates in media supplemented with cosmic calf serum (Complete, Thermofisher Scientific) or CSS (Midsci). Cells were left untreated or treated with DMSO (vehicle), Bay-11-7085 (Enzo Life Sciences, 1 μM), Casodex (Selleck Chemicals, 10 μM), or BMS-777607 (Selleck Chemicals, 5 μM) daily. After 10 days, images of spheres were taken using a Zeiss Axiovert S100TV inverted microscope (Carl Zeiss Microscopy), and spheres >25 μm in diameter were counted using ImageJ software. The 25-μm threshold was established based on the average sphere size obtained for the control cells. For 2D growth, 2.5 × 104 cells were plated on 12-well plates and counted every 24 hours. Myc-CaP Ctrl or Myc-CaP Ron OE cells were grown in 2D and treated with DMSO (vehicle), LiCl (Sigma, 10 mM, 4 hours), or Bay-11-7085 (Bay 11, 5 μM, 4 hours) when cells were ~70% confluent prior to fractionation.
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4

Casticin Modulates Cytokine and ICAM-1 Expression

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Total RNA for detection of A549-related cytokines, chemokines, and ICAM-1 was extracted after stimulation and treatment with casticin. cDNA was synthesized using a cDNA synthesis kit (Life Technologies), and gene expression was measured by incorporation of fluorescent SYBR Green using a spectrofluorometric thermal cycler (iCycler; Bio-Rad Laboratories, Hercules, CA, USA). Specific primers were designed as shown in Table 1. PI3K inhibitor (AS604850) and AKT inhibitor (Akt1/2 kinase inhibitor) (Sigma), NF-κB inhibitor (BAY11-7085), and MAPK inhibitors (JNK inhibitor SP600125, ERK inhibitor PD98059, and p38 inhibitor SB203580) (Enzo Life Sciences, Inc., Farmingdale, NY, USA) were cultured with casticin for detection of ICAM-1 gene expression.
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5

Chemotaxis Assay of BMDMs

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Migration assays of WT BMDMs toward SFM or CM from R7 cells with or without shRNA targeting of HGFL (1:1 dilution ratio of BMDM CM to SFM), or co-culture with R7 or R7 shHGFL cells (1:10 ratio of R7 cells to WT BMDM cells) using 4000 R7 cells and 40,000 BMDM cells were performed for up to 6 h using Boyden chambers [5 (link)]. For studies involving inhibitors, R7 cells were pretreated with inhibitors including 20 µM Ravoxertinib (ERK1/2 inhibitor; MedChemExpress, Monmouth Junction, NJ, USA, Cat#50-187-3397), 20 µM Afuresertib (Akt inhibitor; MedChemExpress Cat#50-187-3338), 20 µM STAT3 Inhibitor VII, S3I-201 (Calbiochem Cat#573103), or 10 µM Bay 11-7085 (EnzoLifeSciences, Farmingdale, NY, USA, Cat#573103) for 6 h prior to washing out and addition of fresh media, and addition of BMDM-containing Boyden chambers. The number of BMDMs that migrated toward SFM was used as a reference control. Following incubation, chambers containing migrated cells were removed, and the cells were fixed and stained using 0.5% w/v Crystal Violet (Sigma, Sofia, Bulgaria, Cat#C6158) in methanol. The upper part of the chamber was gently wiped clean using a cotton tip applicator to remove non-migrated cells prior to imaging and counting transmigrated cells.
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6

Cytokine Signaling Pathway Dissection

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Murine C2C12 myoblasts and human primary skeletal myoblasts were
serum-starved overnight, and then treated with or without inhibitors of the
TGF-β/Smad, NF-ĸB and c-Jun/AP1 pathways, which are SB431542
(Thermo Fisher), CC401 (ThermoFisher) and BAY 11-7085 (Enzo), respectively,
followed by treatment with recombinant cytokines purchased from R&D
Systems (recombinant mouse TNF-α and TGF-β1 at 50 ng/ml and 10
ng/ml, respectively, for C2C12, recombinant human TNF-α and
TGF-β1 at 50 ng/ml and 10 ng/ml, respectively, for human primary
skeletal myoblasts). In brief, cells were pretreated with either vehicle (DMSO)
control, or 10 μM of the respective pathway inhibitors for 1 hour, and
then treated with TGF-β1 for 9 hours or TNF-α for 3 hours before
harvest. Cells with different treatments were harvested together for subsequent
analysis.
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7

Cell Viability Assay Components

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White, solid bottom tissue culture treated 96-well microplates were purchased from E&K Scientific (Santa Clara, CA). CellTiter-Glo Luminescent Cell Viability Assay was purchased from Promega (Madison, WI); dimethyl sulfoxide (DMSO) and amphotericin B were purchased from Sigma-Aldrich (St. Louis, MO); ebselen (2-phenyl-1,2-benzoisoselenazol-3(2H)-one), BAY 11-7082 or (E)-3-[(4-methylphenyl)-sulfonyl]-2-propenenitrile and BAY 11-7085 or (2E)-3-[[4-(1,1-dimethylethyl)phenyl]sulfonyl]-2-propenenitrile were purchased from Enzo Life Sciences (Farmingdale, NY).
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8

Cytokine Signaling Pathway Dissection

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Murine C2C12 myoblasts and human primary skeletal myoblasts were
serum-starved overnight, and then treated with or without inhibitors of the
TGF-β/Smad, NF-ĸB and c-Jun/AP1 pathways, which are SB431542
(Thermo Fisher), CC401 (ThermoFisher) and BAY 11-7085 (Enzo), respectively,
followed by treatment with recombinant cytokines purchased from R&D
Systems (recombinant mouse TNF-α and TGF-β1 at 50 ng/ml and 10
ng/ml, respectively, for C2C12, recombinant human TNF-α and
TGF-β1 at 50 ng/ml and 10 ng/ml, respectively, for human primary
skeletal myoblasts). In brief, cells were pretreated with either vehicle (DMSO)
control, or 10 μM of the respective pathway inhibitors for 1 hour, and
then treated with TGF-β1 for 9 hours or TNF-α for 3 hours before
harvest. Cells with different treatments were harvested together for subsequent
analysis.
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