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9 protocols using ethd 1

1

Live/Dead Staining of ASCs and DFATs

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2D cultures and 3D spheroids of ASCs and DFATs were simultaneously stained with the green Calcein AM (Cal-AM, 0.25 µL/mL) dye and red ethidium homodimer-1 (1 µL/mL, EthD-1) dye (Invitrogen). The cells were incubated with a mix of dyes for 30 min in darkness at room temperature and then observed and photographed under fluorescence microscopy Axio Vert.A1 (Carl Zeiss, Oberkochen, Germany). To obtain the precise number of living and dead cells, the 3D spheroids were firstly disrupted with Accutase Cell Detachment (Beckton Dickinson) for 15 min, then stained with Cal-AM + EthD-1 and Hoechst 33342 dye (1 µg/mL, Sigma-Aldrich) for the nuclei staining. Live and dead ASCs and DFATs in both 2D and 3D forms were counted with the ZEN 2 Blue Edition software (Carl Zeiss, Oberkochen, Germany), according to the previously described protocols [11 (link)].
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2

Live/Dead Cell Assay for 3D Hydrogels

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On days 1 and 7, a live/dead assay was performed using calcein AM (CaAM, Sigma-Aldrich, 56496) as a marker for live cells and ethidium homodimer 1 (EthD1, Sigma-Aldrich, 46043) for dead cell nuclei. In 8-well μ-slides (ibidi), two replicate gels per condition were washed with NaCl/HEPES/CaCl2 buffer and incubated in a staining solution with a CaAM (1 : 500) and EthD1 (1 : 1000) for 15 minutes at 37 °C. Subsequently, the samples were washed twice, the second time incubating for 10 minutes at 37 °C, and immersed in phenol red-free alpha MEM for imaging. At a Leica SP8 CLSM, three 100 μm z-stacks were taken per replicate. An automated analysis was conducted in ImageJ, analyzing particles in MIPs with live particle sizes >50 μm2 and dead particle sizes limited to a range of 10–200 μm2. The percentage of viable cells was calculated as the fraction of live cells over the sum of live and dead cells.
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3

Live-Dead Staining of Microtissues

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Calcein-AM (Sigma, # 17783, Buchs, Switzerland) and Ethidium Homodimer-1 (EthD-1, Sigma, # 46043, Buchs, Switzerland) staining was used for live dead staining. A staining solution was prepared by adding 2 μl of Calcein AM (stock: 1 mM in DMSO) and 1 μl of EthD-1 (stock: 1 mM in DMSO) per 1 ml culture medium. MT were stained for 2 h under standard culture conditions. Prior to fluorescence imaging, MT were washed twice with PBS. A ZEISS LSM 800 with Airyscan (Zeiss, Feldbach, Switzerland) confocal laser scanning microscope was used for image acquisition. Z-stack images of 20 μm in z-dimension were taken and 20 individual images assembled to a maximum intensity project using the Zeiss ZEN 2.3 SP1 software.
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4

Live/Dead Cell Viability Assay

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The live/dead assay
allows a quantitative analysis of viability
at the time of staining through enzymatic activity. The selected reagents
to perform this assay were calcein-AM (Invitrogen, Ex/Em = 494/517 nm), staining live cells green, and EthD-1 (Sigma-Aldrich, Ex/Em = 528/617 nm), staining dead cells
magenta. The whole procedure, from stock solution preparation until
the staining protocol, follows the Thermo Fisher LIVE/DEAD
viability/cytotoxicity kit for mammalian cells protocol. The resulting
solution contains approximately 2 μM of calcein-AM and 4 μM
of EthD-1. Materials are considered biocompatible for viability percentages
over 70%, according to the criteria of the ISO10993-5 standard.63 (link) To perform this assay, a multicolor confocal
microscope (Zeiss, LSM780) is used. This imaging
is not performed on IP-S samples since the glass substrate is too
thick to image with the confocal microscope.
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5

Fluorescent Viability Assessment of 3D Constructs

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The cell survival rate in the 3D cell constructs was assessed at one and three days after fabrication. A fluorescent live/dead staining solution (Thermo Fisher) was used. Each 3D cell construct and the 2D cultured cells were washed in Dulbecco’s PBS (DPBS) three times before staining. The DPBS mixture with Calcein-AM (2 µM) and EthD-1 (4 µM) was filtered through a 0.22-µm syringe filter (Sigma-Aldrich). Cell morphologies were observed under a fluorescence microscope (Leica DMi8, Leica). Three independent samples were analyzed.
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6

Evaluating Sperm Integrity via Dual Staining

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Plasma membrane integrity and acrosome integrity were evaluated by staining the spermatozoa with Ethidium homodimer-1 (EthD-1, Molecular probes Inc., Eugene, OR, USA) and fluorescein isothiocyanate conjugated peanut agglutinin (FITC-PNA, Sigma, St. Louis, MO, USA) (Kitiyanant et al., 2002 (link)). In brief, an aliquot of 5 μL sperm suspension was mixed with an equal volume of 2 μM EthD-1 for 10 min at 37°C. Subsequently, a 5 μL of a 10 mg/mL salmon sperm DNA (Sigma-Aldrich Chemie GmbH, Steinheim, Germany) in phosphate buffered saline (PBS) was added to bind excessive EthD-1 for 3 min at 37°C. After centrifugation, the spermatozoa were then smeared on a glass microscopic slide and fixed in 95% (v/v) ethanol for 30 s. Fixed spermatozoa were stained with 100 μg/mL FITC-PNA in PBS in a humidified chamber for 30 min at 4°C then rinsed with 4°C distilled water and allowed to air dry at 4°C. The fluorescent labeled slides were kept in the dark until evaluation. A total of 200 spermatozoa per slide were randomly visualized using an epifluorescent microscope at 1,000× and then classified into 3 categories as previously described (Cheng et al., 1996 (link)).
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7

Cell Viability Assay via Fluorescence

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We applied the LIVE/DEAD Viability/Cytotoxicity Kit (cat# L3244, Thermo Fisher Scientific) to examine transmigrating cell viability. Cells were first collected from the selected microchambers underneath the fabricated membrane by flowing culture media along the microchambers. We then seeded cells on a sterile glass coverslip in a 35 mm disposable Petri dish for 2 h, followed by adding Calcein AM (2 μM) and EthD-1 (4 μM) (Sigma-Aldrich) in the culture medium. After incubating for 30–45 min at room temperature, fluorescence images were captured using an inverted fluorescence microscope (TE300, Nikon, Tokyo, Japan).
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8

Quantifying Cell Death with EthD-1

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Cell death was determined by staining with ethidium homodimer-1 (EthD-1) (Sigma Aldrich, USA), a fluorescent nuclear stain that penetrates dead cells and increases intensity after binding to DNA. Staining was done according to the standard procedures. Staining cells on different patterns were counted in 3 randomly selected microscopic fields (at least 500 cells) and the % positive cells were calculated relative to the total number of cells on the pattern. Cell death rate data are expressed as the mean % positive cells ± SEM.
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9

Cell Viability and Apoptosis Assays

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Cell proliferation and cell viability was assessed using alamarBlue® assay (Thermo Scientific, Waltham, MA). Fluorescence intensity was measured after 2 hrs of incubation with 10 μl reagent at 37°C using a Clariostar plate reader (BMG Labtech, Cary, NC). Cell apoptosis and necrosis was determined with Annexin V/7-AAD (BD Biosciences, San Jose, CA) flow cytometery analysis. EthD-1 (ethidium homodimer-1, Sigma, St. Louis, MO) staining was visualized under fluorescence microscopy (Evos® FL Imaging Systems).
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