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7 protocols using poly4053

1

Quantifying NK Cell Activation

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KIR-CD3ζ JNL cells and MHC class I-transduced 721.221 cells were co-cultured at a 1:1 ratio (1×105 cells each) overnight at 37 °C and 5% CO2 in R10 medium without antibiotics. KIR-CD3ζ JNL cells were also incubated with parental 721.221 cells as negative control and with anti-Flag-tag (5 μg/ml) (clone 5A8E5, GenScript) and goat anti-mouse (10 μg/ml) (Poly4053, Biolegend) antibodies as a positive “X-link” control. Each combination was tested in triplicate wells (100 μl/well). After 12–18 hours, BriteLite Plus luciferase substrate (PerkinElmer) was added to each well (100 μl/well) and the relative light units (RLU) of luciferase activity was measured using a VICTOR X4 multiplate reader (PerkinElmer).
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2

Quantifying KIR-CD3ζ+ Cell Activation

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KIR-CD3ζ+ JNL cells (1x105) were co-cultured with Mamu-AG+ or parental 721.221 cells (1x105) overnight at 37°C and 5% CO2 in triplicate wells of white 96-well plates in 100 µl R10 medium without antibiotics. As a positive control, KIR-CD3ζ+ JNL cells were treated with 5 µg/ml of an anti-Flag-tag monoclonal antibody (GenScript) and 10 µg/ml of a goat anti-mouse secondary antibody (Poly4053, Biolegend). After 12-18 hours, 100 µl of BriteLite Plus luciferase substrate (PerkinElmer) was added to each well and luciferase activity in relative light units (RLU) was measured using a VICTOR X4 multiplate reader (PerkinElmer).
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3

Fusion Protein Binding Assay

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The binding of the fusion proteins was tested by incubating the different fusion proteins with either epidermal cells containing LC or with moDC for 15 min on ice. After washing, cells were stained with an APC‐conjugated secondary goat‐anti‐mouse IgG (Poly4053, BioLegend) for 15 min on ice and analyzed by flow cytometry.
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4

Protein Phosphorylation Analysis in BMDCs

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To analyse protein phosphorylation, 3–5 million BMDCs or 2 million pMacs were stimulated with LPS or poly I:C as indicated and cells lysed in lysis buffer (150 mM NaCl, 50 mM TrisHCl pH8.0, 0.1% SDS, 0.5% Sodium Deoxycholate, 1% Triton) supplemented with protease (cOmplete, Sigma) and phosphatase (PhosSTOP, Sigma) inhibitors. Samples were resolved by SDS-PAGE and proteins transferred to PVDF membranes. The following antibodies were used for western blot (all from Cell Signalling unless specified otherwise): β-actin (1:3000, 8H10D10), ERK (1:1000, L34F12), p-ERK (1:1000, 9101), p38 (1:1000, D13E1), p-p38 (1:1000, 28B10), p65 (1:1000, D14E12), p-p65 (1:1000, 93H1), CD36 (1:1000, PA5-33291, ThermoFisher), anti-mouse IgG (1:3000, Poly4053, Biolegend), anti-rabbit IgG (1:3000, sc-2955, Santa Cruz Biotechnology), PPARδ (1:500, ab23673, Abcam). Membranes were imaged in an Amersham Imager 600 and band intensity quantified with Fiji (ImageJ).
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5

Multiplex Flow Cytometry for Immune Profiling

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For flow cytometric analysis, cell suspensions were Fc-blocked using anti-CD16/32 mAb (BioLegend, clone 93) combined to murine serum 4% (Thermo Fisher Scientific). Stainings were performed with the following mAb: CD45.2-BUV737 (clone 104, BD), Ly6G-BUV395 (clone 1A8, BD), Ly6C-BV785 (clone HK1.4, BioLegend), CD11b-PerCp5.5 (clone M1/70, BioLegend), F4/80–Alexa Fluor 594 (BM8, BioLegend), F4/80-APC (allophycocyanin) (BM8, BioLegend), F4/80-APCCy7 (BM8, BioLegend), mCD20–Alexa Fluor 647 (clone SA275A11, BioLegend), and anti-IgG–PE (phycoerythrin) (poly4053, BioLegend). Analyses were performed with an LSRFortessa II cytometer (BD Biosciences) or a CytoFLEX LX (Beckman Coulter) and analyzed with FlowJo software version 10.6.2 (BD Biosciences).
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6

Multicolor Flow Cytometry of Cell Markers

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Cells were harvested using trypsin and stained with anti-myoferlin 7D2 (Abcam, ab76746), anti-CD151 conjugated to Allophycocyanin (Biolegend, #350405), or anti-CD99 conjugated to phycoerythrin (Biolegend, #318008) according to the manufacture’s recommendations. Secondary antibodies were used when appropriate (Biolegend, #Poly4053). Cells were stained for 40 minutes at 4 C followed by once the addition of 3 milliliters of PBS, centrifugation at 1000 × g for five minutes and suspension in PBS prior to flow cytometry on a BD FACS Canto Flow Cytometer. Data analysis was performed using FlowJo (Tree Star, Inc, Ashland, OR)
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7

MHV-68 Viral Antibody ELISA

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Serum was collected at various time points post-MHV-68 infection for the assessment viral-specific serum antibody as has been previously described [24 (link)]. Briefly, NIH/3T3 cells (ATCC CRL-1658) were infected with 0.03–0.1 MOI of MHV-68 and incubated at 37°C for 48 hours. Subsequently, monolayers were washed with PBS and subjected to mechanical disruption to allow for the collection of MHV-68 infected cell suspensions. Cell suspensions were then sonicated twice for 30 seconds to obtain a homogenous cell lysate. Cellular lysate was diluted 1:10 in sterile carbonate-bicarbonate buffer (Invitrogen) and 100ul per well was used to coat 96-well flat bottom microtiter plates (Immulon 4HBX, VWR). Plates were incubated for 48 hours at room temperature. A standard ELISA was then performed utilizing serum dilutions of 1:50 in blocking buffer and goat anti-mouse IgG-HRP (Poly4053, Biolegend) was used for the detection of MHV-68-specific immunoglobulins. Colorimetric development was performed using the TMB substrate system (Thermo Scientific) and acquired at 450nm on a Spectra MAX 340PC Microplate reader (Molecular Devices).
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