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5 protocols using anti p53

1

Western Blot Analysis of Liver Tissue

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Briefly, liver tissue was snap frozen in liquid nitrogen. Tissue was homogenized in lysis buffer, and supernatants were quantified for protein amount (18 (link)). 160 ug of cell lysate was loaded in 10% SDS-PAGE, transferred to a nitrocellulose membrane and incubated with primary antibody overnight at 4° C (1000x dilution for anti-p53 (Novus), 2500x anti-GAPDH, 5000x anti-mouse IgG-HRP (Santa Cruz), 500x anti-pERK1/2 (Santa Cruz), 500x anti-MDM2 (Santa Cruz).
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2

Quantitative Western Blot Analysis of Cellular Proteins

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Cells or ground tissue samples were lysed with RIPA lysis and extraction buffer (Thermo Fisher Scientific) and protease inhibitor cocktail (Roche, Basel, Switzerland) for 10 min at room temperature. Then, the samples were centrifuged for 10 min at 12,000 rpm at 4°C. The supernatants were collected and further processed using a Pierce BCA protein assay kit (Thermo Fisher Scientific) for protein quantification.
For target protein measurement, automated quantitative western blot (Wes assay) was performed on a Wes instrument (ProteinSimple, San Jose, CA, USA) according to the manufacturer’s instruction. The following antibodies were purchased commercially: anti-Cas9 (Cat#: NBP2-36440; Novus Biologicals, Centennial, CO, USA), anti-p53 (Cat#: NBP2-29453, Novus Biologicals), anti-PTEN (Cat#: AF847-SP, Novus Biologicals), anti-APC (Cat#: NB100-91662SS, Novus Biologicals), and anti-actin (Cat#: ab8227, Abcam, Cambridge, UK).
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3

Isolation and Culture of Primary Mouse Cells

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Primary mouse embryonic fibroblasts (MEFs) were isolated from 13.5 days old embryos derived from crossing heterozygous mice following standard procedures and maintained in DMEM supplemented with 15% FBS, penicillin-streptomycin and 100 μm β-mercaptoethanol. Mouse primary keratinocytes were isolated from 2 day old mice following previously described protocol (26 (link)) and cultured in defined keratinocyte-SFM (Life Technologies Cat. No. 10744019). The following antibodies were used in the study: anti-E2F1 (C20, Santa Cruz, Cat. No. sc-193), anti-CPD (Cosmo Bio, clone TDM-2, Cat. No. CAC-MN-DND-001), anti-6-4PP (Cosmo Bio, clone 64M-2, Cat. No. CAC-MN-DND-002), anti-XPC (Bioss USA antibodies Cat. No. bs-6634R), anti-XPA (sc-853), anti-GCN5 (Cell signaling Cat. No. 3305S), anti-H3K9ac (Cell Signaling Cat. No. 9649S), anti-p53 (Novus Biologicals Cat. No. NB200-103), GAPDH (GenScript Cat. No. A00191) and normal rabbit IgG (Cell Signaling Cat. No. 2729).
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4

Western Blot Analysis of p53 and Actin

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Briefly, cells were lysed in lysis buffer, and supernatants were quantified for protein amount. Eighty microgram of cell lysate was loaded in 10% SDS-PAGE, transferred to a nitrocellulose membrane and incubated with primary antibody overnight at 4° C (1000x dilution for anti-p53 (Novus), 1000x anti-actin.
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5

Western Blot Analysis of Apoptosis Markers

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The cells were lysed on ice for 30 min in lysis buffer containing 50 mM Tris-HCl, pH 7.4, 150 mM NaCl, 1% Nonidet P-40, and 0.1% sodium dodecyl sulfate (SDS) supplemented with protease inhibitors (10 mg/mL leupeptin, 10 mg/mL pepstatin A, and 10 mg/mL aprotinin). For western blot analysis, 15 μg sample was resolved by 12% SDS-polyacrylamide gel electrophoresis (PAGE) and electrotransferred onto a nitrocellulose membrane (Whatman, Piscataway, NJ) [14] . The primary antibodies used were anti-HIF-1α, anti-ILKAP, and anti-p53 from Novus Biologicals (Littleton, CO), and anti-cleaved caspase-3, anti-cleaved caspase-7, and anti-cleaved caspase-8 from Cell Signaling Technology (Danvers, MA) at a dilution of 1:500. To normalize protein loading, an anti-β-actin (8457; Cell Signaling Technology) antibody was used at a 1:2, 000 dilution. Horseradish peroxidase-conjugated secondary antibodies were used at a 1:2, 000 dilution. Antigen-antibody complexes were visualized using an enhanced chemiluminescence detection system (Millipore, Billerica, MA) as recommended by the manufacturer. The immunoreactive bands were analyzed semi-quantitatively by normalizing band intensity to the background on the scanned films with Quantity One ® software (Bio-Rad Laboratories, Inc., Hercules, CA), and relative quantification is indicated below each band in the figures.
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