DNA from the grown colonies was isolated using commercially available
PROBA-GS kit (DNA Technology, Russia). Polymerase chain reaction was performed with an Eppendorf
MasterCycler Personal cycler. Each PCR reaction mixture contained 2.5 µl of 10× reaction buffer, 1 µl of 10 mM dNTPs, 1 µl of 10 µM forward primer, 1 µl of 10 µM reverse primer, 3 µl of 25 mM Mg
2+, 1 µg of template DNA, 2.5 units of thermostable
Taq DNA polymerase (Evrogen, Russia), and deionized water (up to 25 μl). PCR regime included initial denaturation at 94 °C for 5 min; 35 cycles of denaturation at 94 °C for 30 s, annealing at 54 °C for 30 s, elongation at 72 °C for 45 s; final elongation at 72 °C for 10 min. Fungal-specific primers for molecular identification were: direct ITS1 primer—5′-TCCGTAGGTGAACCTGCGG; reverse ITS4 primer—5′-TCCTCCGCTTATTGATATGC (White et al. 1990 ).
PCR products were stained with ethidium bromide and visualized at 312 nm with a TCO-20LM transilluminator after electrophoresis in 2% agarose gel.
RCR products were purified from the gel with a
Cleanup Standard kit (Evrogen, Russia) and sequenced with an Applied Biosystems
3500 automated sequencer using a
BigDye Terminator v3.1 Cycle Sequencing Kit and ITS1/ITS4 primers.
Syromyatnikov M.Y., Kiryanova S.V, & Popov V.N. (2018). Development and validation of a TaqMan RT-PCR method for identification of mayonnaise spoilage yeast Pichia kudriavzevii. AMB Express, 8, 186.